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Cluster: HRGMv2_2393_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2393_31 HRGMv2_2393_31_8 7371 8006 + 9.B.104.1.3
pfam HRGMv2_2393_31 HRGMv2_2393_31_9 7993 8409 + HIT | DcpS_C
STP HRGMv2_2393_31 HRGMv2_2393_31_10 8432 8986 + Sigma70_r2 | Sigma70_r4_2
CAZyme HRGMv2_2393_31 HRGMv2_2393_31_11 8971 10038 - GT28
NULL(UNKNOWN) HRGMv2_2393_31 HRGMv2_2393_31_12 10199 11008 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2393_31 HRGMv2_2393_31_13 11654 12685 - LacI
TC HRGMv2_2393_31 HRGMv2_2393_31_14 13106 15385 + 4.A.1.1.11
pfam HRGMv2_2393_31 HRGMv2_2393_31_15 15405 16334 + Exo_endo_phos
CAZyme HRGMv2_2393_31 HRGMv2_2393_31_16 16415 17917 + GH77
TC HRGMv2_2393_31 HRGMv2_2393_31_17 18424 19785 + 2.A.66.1.32
Gene ID: HRGMv2_2393_31_8
Type: TC
Location: 7371 - 8006 (+)
Gene ID: HRGMv2_2393_31_9
Type: pfam
Location: 7993 - 8409 (+)
Gene ID: HRGMv2_2393_31_10
Type: STP
Location: 8432 - 8986 (+)
Gene ID: HRGMv2_2393_31_11
Type: CAZyme
Location: 8971 - 10038 (-)
Gene ID: HRGMv2_2393_31_12
Type:
Location: 10199 - 11008 (+)
Gene ID: HRGMv2_2393_31_13
Type: TF
Location: 11654 - 12685 (-)
Gene ID: HRGMv2_2393_31_14
Type: TC
Location: 13106 - 15385 (+)
Gene ID: HRGMv2_2393_31_15
Type: pfam
Location: 15405 - 16334 (+)
Gene ID: HRGMv2_2393_31_16
Type: CAZyme
Location: 16415 - 17917 (+)
Gene ID: HRGMv2_2393_31_17
Type: TC
Location: 18424 - 19785 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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