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Cluster: HRGMv2_2393_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2393_139 HRGMv2_2393_139_9 9940 12126 + GH36
TC HRGMv2_2393_139 HRGMv2_2393_139_10 12142 14112 + 4.A.1.2.9
CAZyme HRGMv2_2393_139 HRGMv2_2393_139_11 14144 15613 + GH32
pfam HRGMv2_2393_139 HRGMv2_2393_139_12 15798 16913 + Radical_SAM | SPASM
TC HRGMv2_2393_139 HRGMv2_2393_139_13 16910 18664 + 9.B.33.1.1
TF HRGMv2_2393_139 HRGMv2_2393_139_14 18661 20148 + HTH_AraC | HTH_AraC
pfam HRGMv2_2393_139 HRGMv2_2393_139_15 20298 21380 + Bmp
TC HRGMv2_2393_139 HRGMv2_2393_139_16 21417 22931 + 3.A.1.2.17
TC HRGMv2_2393_139 HRGMv2_2393_139_17 22928 23989 + 3.A.1.2.12
TC HRGMv2_2393_139 HRGMv2_2393_139_18 23986 24849 + 3.A.1.2.18
Gene ID: HRGMv2_2393_139_9
Type: CAZyme
Location: 9940 - 12126 (+)
Gene ID: HRGMv2_2393_139_10
Type: TC
Location: 12142 - 14112 (+)
Gene ID: HRGMv2_2393_139_11
Type: CAZyme
Location: 14144 - 15613 (+)
Gene ID: HRGMv2_2393_139_12
Type: pfam
Location: 15798 - 16913 (+)
Gene ID: HRGMv2_2393_139_13
Type: TC
Location: 16910 - 18664 (+)
Gene ID: HRGMv2_2393_139_14
Type: TF
Location: 18661 - 20148 (+)
Gene ID: HRGMv2_2393_139_15
Type: pfam
Location: 20298 - 21380 (+)
Gene ID: HRGMv2_2393_139_16
Type: TC
Location: 21417 - 22931 (+)
Gene ID: HRGMv2_2393_139_17
Type: TC
Location: 22928 - 23989 (+)
Gene ID: HRGMv2_2393_139_18
Type: TC
Location: 23986 - 24849 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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