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Cluster: HRGMv2_2393_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2393_123 HRGMv2_2393_123_31 36238 37575 - 2.A.66.1.33
TF HRGMv2_2393_123 HRGMv2_2393_123_32 38254 39258 + LacI
TC HRGMv2_2393_123 HRGMv2_2393_123_33 39739 41721 + 4.A.1.2.12
CAZyme HRGMv2_2393_123 HRGMv2_2393_123_34 41786 43291 + GH32
peptidase HRGMv2_2393_123 HRGMv2_2393_123_35 43503 44963 + M20.UPC
pfam HRGMv2_2393_123 HRGMv2_2393_123_36 45169 46302 - Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_3
CAZyme HRGMv2_2393_123 HRGMv2_2393_123_37 46523 47698 + GH18
peptidase HRGMv2_2393_123 HRGMv2_2393_123_38 47673 49133 - M20.UPW
peptidase HRGMv2_2393_123 HRGMv2_2393_123_39 49220 51100 - C44.UPW
TC HRGMv2_2393_123 HRGMv2_2393_123_40 51252 51929 - 2.A.45.3.1
Gene ID: HRGMv2_2393_123_31
Type: TC
Location: 36238 - 37575 (-)
Gene ID: HRGMv2_2393_123_32
Type: TF
Location: 38254 - 39258 (+)
Gene ID: HRGMv2_2393_123_33
Type: TC
Location: 39739 - 41721 (+)
Gene ID: HRGMv2_2393_123_34
Type: CAZyme
Location: 41786 - 43291 (+)
Gene ID: HRGMv2_2393_123_35
Type: peptidase
Location: 43503 - 44963 (+)
Gene ID: HRGMv2_2393_123_36
Type: pfam
Location: 45169 - 46302 (-)
Gene ID: HRGMv2_2393_123_37
Type: CAZyme
Location: 46523 - 47698 (+)
Gene ID: HRGMv2_2393_123_38
Type: peptidase
Location: 47673 - 49133 (-)
Gene ID: HRGMv2_2393_123_39
Type: peptidase
Location: 49220 - 51100 (-)
Gene ID: HRGMv2_2393_123_40
Type: TC
Location: 51252 - 51929 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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