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Cluster: HRGMv2_2393_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2393_89 HRGMv2_2393_89_1 3 497 + 2.A.25.1.4
TC HRGMv2_2393_89 HRGMv2_2393_89_2 754 1686 + 2.A.19.5.2
pfam HRGMv2_2393_89 HRGMv2_2393_89_3 2116 2544 + PrcB_C
pfam HRGMv2_2393_89 HRGMv2_2393_89_4 3113 3988 + ATP_bind_3
CAZyme HRGMv2_2393_89 HRGMv2_2393_89_5 4046 5611 + CBM50
pfam HRGMv2_2393_89 HRGMv2_2393_89_6 5911 6981 + GIY-YIG
TC HRGMv2_2393_89 HRGMv2_2393_89_7 7035 7685 - 1.C.113.1.3
pfam HRGMv2_2393_89 HRGMv2_2393_89_8 7798 8568 + PseudoU_synth_2
TC HRGMv2_2393_89 HRGMv2_2393_89_9 8702 9802 + 2.A.86.1.3
Gene ID: HRGMv2_2393_89_1
Type: TC
Location: 3 - 497 (+)
Gene ID: HRGMv2_2393_89_2
Type: TC
Location: 754 - 1686 (+)
Gene ID: HRGMv2_2393_89_3
Type: pfam
Location: 2116 - 2544 (+)
Gene ID: HRGMv2_2393_89_4
Type: pfam
Location: 3113 - 3988 (+)
Gene ID: HRGMv2_2393_89_5
Type: CAZyme
Location: 4046 - 5611 (+)
Gene ID: HRGMv2_2393_89_6
Type: pfam
Location: 5911 - 6981 (+)
Gene ID: HRGMv2_2393_89_7
Type: TC
Location: 7035 - 7685 (-)
Gene ID: HRGMv2_2393_89_8
Type: pfam
Location: 7798 - 8568 (+)
Gene ID: HRGMv2_2393_89_9
Type: TC
Location: 8702 - 9802 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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