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Cluster: HRGMv2_2393_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2393_57 HRGMv2_2393_57_19 18258 19331 + GT2
pfam HRGMv2_2393_57 HRGMv2_2393_57_20 19499 20428 + Collagen
pfam HRGMv2_2393_57 HRGMv2_2393_57_21 20441 22186 - Resolvase | Recombinase | Zn_ribbon_recom
TC HRGMv2_2393_57 HRGMv2_2393_57_22 22367 23089 - 3.A.1.3.15
TC HRGMv2_2393_57 HRGMv2_2393_57_23 23073 23741 - 3.A.1.3.15
TC HRGMv2_2393_57 HRGMv2_2393_57_24 23763 24662 - 3.A.1.3.15
CAZyme HRGMv2_2393_57 HRGMv2_2393_57_25 24914 25822 + CE4
CAZyme HRGMv2_2393_57 HRGMv2_2393_57_26 25819 26637 + CE4
Gene ID: HRGMv2_2393_57_19
Type: CAZyme
Location: 18258 - 19331 (+)
Gene ID: HRGMv2_2393_57_20
Type: pfam
Location: 19499 - 20428 (+)
Gene ID: HRGMv2_2393_57_21
Type: pfam
Location: 20441 - 22186 (-)
Gene ID: HRGMv2_2393_57_22
Type: TC
Location: 22367 - 23089 (-)
Gene ID: HRGMv2_2393_57_23
Type: TC
Location: 23073 - 23741 (-)
Gene ID: HRGMv2_2393_57_24
Type: TC
Location: 23763 - 24662 (-)
Gene ID: HRGMv2_2393_57_25
Type: CAZyme
Location: 24914 - 25822 (+)
Gene ID: HRGMv2_2393_57_26
Type: CAZyme
Location: 25819 - 26637 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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