Cluster: HRGMv2_2393_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2393
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2393_1 | HRGMv2_2393_1_2 | 1598 | 2488 | - | 2.A.7.3.49 |
| peptidase | HRGMv2_2393_1 | HRGMv2_2393_1_3 | 2551 | 3732 | - | M20.UPD |
| TC | HRGMv2_2393_1 | HRGMv2_2393_1_4 | 3745 | 5151 | - | 2.A.118.1.8 |
| pfam | HRGMv2_2393_1 | HRGMv2_2393_1_5 | 5264 | 5632 | - | Ribonuc_L-PSP |
| pfam | HRGMv2_2393_1 | HRGMv2_2393_1_6 | 5926 | 6735 | - | PepSY | PepSY | PepSY |
| TC | HRGMv2_2393_1 | HRGMv2_2393_1_7 | 6838 | 9465 | - | 3.A.3.2.21 |
| pfam | HRGMv2_2393_1 | HRGMv2_2393_1_8 | 10662 | 11141 | + | LuxS |
| CAZyme | HRGMv2_2393_1 | HRGMv2_2393_1_9 | 11163 | 13013 | - | GH13_11 |
| TC | HRGMv2_2393_1 | HRGMv2_2393_1_10 | 13024 | 14820 | - | 3.A.1.120.6 |
| pfam | HRGMv2_2393_1 | HRGMv2_2393_1_11 | 14817 | 15575 | - | Exo_endo_phos |
| TC | HRGMv2_2393_1 | HRGMv2_2393_1_12 | 15682 | 17895 | - | 3.A.7.7.1 |
| pfam | HRGMv2_2393_1 | HRGMv2_2393_1_13 | 18029 | 18871 | - | SIMPL |
| TC | HRGMv2_2393_1 | HRGMv2_2393_1_14 | 19144 | 20772 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_2393_1_2
Type: TC
Location: 1598 - 2488 (-)
Type: TC
Location: 1598 - 2488 (-)
Gene ID: HRGMv2_2393_1_3
Type: peptidase
Location: 2551 - 3732 (-)
Type: peptidase
Location: 2551 - 3732 (-)
Gene ID: HRGMv2_2393_1_4
Type: TC
Location: 3745 - 5151 (-)
Type: TC
Location: 3745 - 5151 (-)
Gene ID: HRGMv2_2393_1_5
Type: pfam
Location: 5264 - 5632 (-)
Type: pfam
Location: 5264 - 5632 (-)
Gene ID: HRGMv2_2393_1_6
Type: pfam
Location: 5926 - 6735 (-)
Type: pfam
Location: 5926 - 6735 (-)
Gene ID: HRGMv2_2393_1_7
Type: TC
Location: 6838 - 9465 (-)
Type: TC
Location: 6838 - 9465 (-)
Gene ID: HRGMv2_2393_1_8
Type: pfam
Location: 10662 - 11141 (+)
Type: pfam
Location: 10662 - 11141 (+)
Gene ID: HRGMv2_2393_1_9
Type: CAZyme
Location: 11163 - 13013 (-)
Type: CAZyme
Location: 11163 - 13013 (-)
Gene ID: HRGMv2_2393_1_10
Type: TC
Location: 13024 - 14820 (-)
Type: TC
Location: 13024 - 14820 (-)
Gene ID: HRGMv2_2393_1_11
Type: pfam
Location: 14817 - 15575 (-)
Type: pfam
Location: 14817 - 15575 (-)
Gene ID: HRGMv2_2393_1_12
Type: TC
Location: 15682 - 17895 (-)
Type: TC
Location: 15682 - 17895 (-)
Gene ID: HRGMv2_2393_1_13
Type: pfam
Location: 18029 - 18871 (-)
Type: pfam
Location: 18029 - 18871 (-)
Gene ID: HRGMv2_2393_1_14
Type: TC
Location: 19144 - 20772 (-)
Type: TC
Location: 19144 - 20772 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium_A
Species
Lachnoclostridium_A sp002160755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.