Cluster: HRGMv2_2390_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2390
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2390_3 | HRGMv2_2390_3_84 | 106724 | 107911 | + | 2.A.4.7.4 |
| pfam | HRGMv2_2390_3 | HRGMv2_2390_3_85 | 107929 | 108630 | + | Acyl-ACP_TE | Acyl-ACP_TE_C |
| TF | HRGMv2_2390_3 | HRGMv2_2390_3_86 | 108656 | 110251 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2390_3 | HRGMv2_2390_3_87 | 110232 | 111947 | + | 9.B.33.1.1 |
| STP | HRGMv2_2390_3 | HRGMv2_2390_3_88 | 111937 | 112932 | + | Peripla_BP_1 |
| CAZyme | HRGMv2_2390_3 | HRGMv2_2390_3_89 | 113110 | 119310 | + | CBM51 | CBM51 | GH2 |
| CAZyme | HRGMv2_2390_3 | HRGMv2_2390_3_90 | 119582 | 124654 | + | GH3 |
Gene ID: HRGMv2_2390_3_84
Type: TC
Location: 106724 - 107911 (+)
Type: TC
Location: 106724 - 107911 (+)
Gene ID: HRGMv2_2390_3_85
Type: pfam
Location: 107929 - 108630 (+)
Type: pfam
Location: 107929 - 108630 (+)
Gene ID: HRGMv2_2390_3_86
Type: TF
Location: 108656 - 110251 (+)
Type: TF
Location: 108656 - 110251 (+)
Gene ID: HRGMv2_2390_3_87
Type: TC
Location: 110232 - 111947 (+)
Type: TC
Location: 110232 - 111947 (+)
Gene ID: HRGMv2_2390_3_88
Type: STP
Location: 111937 - 112932 (+)
Type: STP
Location: 111937 - 112932 (+)
Gene ID: HRGMv2_2390_3_89
Type: CAZyme
Location: 113110 - 119310 (+)
Type: CAZyme
Location: 113110 - 119310 (+)
Gene ID: HRGMv2_2390_3_90
Type: CAZyme
Location: 119582 - 124654 (+)
Type: CAZyme
Location: 119582 - 124654 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.