Cluster: HRGMv2_2390_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2390
- CGC Family ID: CGCFAM_00199
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2390_46 | HRGMv2_2390_46_6 | 7071 | 8798 | - | 3.A.1.32.3 |
| NULL(UNKNOWN) | HRGMv2_2390_46 | HRGMv2_2390_46_7 | 8841 | 9683 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2390_46 | HRGMv2_2390_46_8 | 10087 | 12063 | - | GH13_4 |
| CAZyme | HRGMv2_2390_46 | HRGMv2_2390_46_9 | 12074 | 14257 | - | GH36 |
| TC | HRGMv2_2390_46 | HRGMv2_2390_46_10 | 14372 | 15214 | - | 3.A.1.1.28 |
| TC | HRGMv2_2390_46 | HRGMv2_2390_46_11 | 15214 | 16086 | - | 3.A.1.1.28 |
| TC | HRGMv2_2390_46 | HRGMv2_2390_46_12 | 16106 | 17389 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_2390_46_6
Type: TC
Location: 7071 - 8798 (-)
Type: TC
Location: 7071 - 8798 (-)
Gene ID: HRGMv2_2390_46_7
Type:
Location: 8841 - 9683 (-)
Type:
Location: 8841 - 9683 (-)
Gene ID: HRGMv2_2390_46_8
Type: CAZyme
Location: 10087 - 12063 (-)
Type: CAZyme
Location: 10087 - 12063 (-)
Gene ID: HRGMv2_2390_46_9
Type: CAZyme
Location: 12074 - 14257 (-)
Type: CAZyme
Location: 12074 - 14257 (-)
Gene ID: HRGMv2_2390_46_10
Type: TC
Location: 14372 - 15214 (-)
Type: TC
Location: 14372 - 15214 (-)
Gene ID: HRGMv2_2390_46_11
Type: TC
Location: 15214 - 16086 (-)
Type: TC
Location: 15214 - 16086 (-)
Gene ID: HRGMv2_2390_46_12
Type: TC
Location: 16106 - 17389 (-)
Type: TC
Location: 16106 - 17389 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.