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Cluster: HRGMv2_2390_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2390_32 HRGMv2_2390_32_9 11125 12072 + GT2
pfam HRGMv2_2390_32 HRGMv2_2390_32_10 12059 12460 + GtrA_DPMS_TM
pfam HRGMv2_2390_32 HRGMv2_2390_32_11 12499 13653 + Polysacc_deac_1 | Bact_surface_Ig-like
TC HRGMv2_2390_32 HRGMv2_2390_32_12 13863 15218 + 9.B.18.1.3
CAZyme HRGMv2_2390_32 HRGMv2_2390_32_13 15219 15956 + GT26
CAZyme HRGMv2_2390_32 HRGMv2_2390_32_14 15940 17187 + GT4
CAZyme HRGMv2_2390_32 HRGMv2_2390_32_15 17177 18463 + GT4
Gene ID: HRGMv2_2390_32_9
Type: CAZyme
Location: 11125 - 12072 (+)
Gene ID: HRGMv2_2390_32_10
Type: pfam
Location: 12059 - 12460 (+)
Gene ID: HRGMv2_2390_32_11
Type: pfam
Location: 12499 - 13653 (+)
Gene ID: HRGMv2_2390_32_12
Type: TC
Location: 13863 - 15218 (+)
Gene ID: HRGMv2_2390_32_13
Type: CAZyme
Location: 15219 - 15956 (+)
Gene ID: HRGMv2_2390_32_14
Type: CAZyme
Location: 15940 - 17187 (+)
Gene ID: HRGMv2_2390_32_15
Type: CAZyme
Location: 17177 - 18463 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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