Cluster: HRGMv2_2390_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2390
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2390_17 | HRGMv2_2390_17_8 | 6732 | 7409 | - | 3.A.1.1.24 |
| pfam | HRGMv2_2390_17 | HRGMv2_2390_17_9 | 7487 | 8011 | - | Gate |
| pfam | HRGMv2_2390_17 | HRGMv2_2390_17_10 | 8153 | 9985 | + | DUF885 |
| TC | HRGMv2_2390_17 | HRGMv2_2390_17_11 | 10004 | 10621 | + | 9.B.156.3.1 |
| CAZyme | HRGMv2_2390_17 | HRGMv2_2390_17_12 | 10722 | 11978 | + | CBM50 |
Gene ID: HRGMv2_2390_17_8
Type: TC
Location: 6732 - 7409 (-)
Type: TC
Location: 6732 - 7409 (-)
Gene ID: HRGMv2_2390_17_9
Type: pfam
Location: 7487 - 8011 (-)
Type: pfam
Location: 7487 - 8011 (-)
Gene ID: HRGMv2_2390_17_10
Type: pfam
Location: 8153 - 9985 (+)
Type: pfam
Location: 8153 - 9985 (+)
Gene ID: HRGMv2_2390_17_11
Type: TC
Location: 10004 - 10621 (+)
Type: TC
Location: 10004 - 10621 (+)
Gene ID: HRGMv2_2390_17_12
Type: CAZyme
Location: 10722 - 11978 (+)
Type: CAZyme
Location: 10722 - 11978 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.