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Cluster: HRGMv2_2390_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2390_16 HRGMv2_2390_16_16 13795 15117 - GH32
TC HRGMv2_2390_16 HRGMv2_2390_16_17 15214 16314 - 3.A.1.1.27
TC HRGMv2_2390_16 HRGMv2_2390_16_18 16319 17170 - 3.A.1.1.20
TC HRGMv2_2390_16 HRGMv2_2390_16_19 17142 18041 - 3.A.1.1.20
STP HRGMv2_2390_16 HRGMv2_2390_16_20 18045 19367 - SBP_bac_1
TF HRGMv2_2390_16 HRGMv2_2390_16_21 19718 20746 + LacI
TC HRGMv2_2390_16 HRGMv2_2390_16_22 20801 21535 - 2.A.115.2.9
TF HRGMv2_2390_16 HRGMv2_2390_16_23 21772 22449 + Trans_reg_C
STP HRGMv2_2390_16 HRGMv2_2390_16_24 22425 23687 + HATPase_c | HisKA
TC HRGMv2_2390_16 HRGMv2_2390_16_25 23877 24548 + 3.A.1.125.3
Gene ID: HRGMv2_2390_16_16
Type: CAZyme
Location: 13795 - 15117 (-)
Gene ID: HRGMv2_2390_16_17
Type: TC
Location: 15214 - 16314 (-)
Gene ID: HRGMv2_2390_16_18
Type: TC
Location: 16319 - 17170 (-)
Gene ID: HRGMv2_2390_16_19
Type: TC
Location: 17142 - 18041 (-)
Gene ID: HRGMv2_2390_16_20
Type: STP
Location: 18045 - 19367 (-)
Gene ID: HRGMv2_2390_16_21
Type: TF
Location: 19718 - 20746 (+)
Gene ID: HRGMv2_2390_16_22
Type: TC
Location: 20801 - 21535 (-)
Gene ID: HRGMv2_2390_16_23
Type: TF
Location: 21772 - 22449 (+)
Gene ID: HRGMv2_2390_16_24
Type: STP
Location: 22425 - 23687 (+)
Gene ID: HRGMv2_2390_16_25
Type: TC
Location: 23877 - 24548 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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