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Cluster: HRGMv2_2390_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2390_14 HRGMv2_2390_14_7 4848 6242 + 2.A.22.5.2
pfam HRGMv2_2390_14 HRGMv2_2390_14_8 6307 7251 + Mem_trans
TF HRGMv2_2390_14 HRGMv2_2390_14_9 7303 7689 - Pencillinase_R
CAZyme HRGMv2_2390_14 HRGMv2_2390_14_10 7836 9851 - GH31_1
TC HRGMv2_2390_14 HRGMv2_2390_14_11 10158 11447 + 3.A.1.135.5
TC HRGMv2_2390_14 HRGMv2_2390_14_12 11506 13122 + 3.A.1.135.5
TF HRGMv2_2390_14 HRGMv2_2390_14_13 13249 13692 + MarR
pfam HRGMv2_2390_14 HRGMv2_2390_14_14 14028 15314 + Aminotran_1_2 | Asp_aminotransf
TC HRGMv2_2390_14 HRGMv2_2390_14_15 16141 17148 - 2.A.98.1.4
TF HRGMv2_2390_14 HRGMv2_2390_14_16 17418 18293 + HTH_1
TC HRGMv2_2390_14 HRGMv2_2390_14_17 18336 19082 + 3.A.1.25.6
Gene ID: HRGMv2_2390_14_7
Type: TC
Location: 4848 - 6242 (+)
Gene ID: HRGMv2_2390_14_8
Type: pfam
Location: 6307 - 7251 (+)
Gene ID: HRGMv2_2390_14_9
Type: TF
Location: 7303 - 7689 (-)
Gene ID: HRGMv2_2390_14_10
Type: CAZyme
Location: 7836 - 9851 (-)
Gene ID: HRGMv2_2390_14_11
Type: TC
Location: 10158 - 11447 (+)
Gene ID: HRGMv2_2390_14_12
Type: TC
Location: 11506 - 13122 (+)
Gene ID: HRGMv2_2390_14_13
Type: TF
Location: 13249 - 13692 (+)
Gene ID: HRGMv2_2390_14_14
Type: pfam
Location: 14028 - 15314 (+)
Gene ID: HRGMv2_2390_14_15
Type: TC
Location: 16141 - 17148 (-)
Gene ID: HRGMv2_2390_14_16
Type: TF
Location: 17418 - 18293 (+)
Gene ID: HRGMv2_2390_14_17
Type: TC
Location: 18336 - 19082 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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