Cluster: HRGMv2_2390_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2390
- CGC Family ID: CGCFAM_03894
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2390_1 | HRGMv2_2390_1_117 | 125137 | 125703 | - | 2.A.107.1.2 |
| TF | HRGMv2_2390_1 | HRGMv2_2390_1_118 | 126026 | 126778 | + | Trans_reg_C |
| STP | HRGMv2_2390_1 | HRGMv2_2390_1_119 | 126782 | 128284 | + | HATPase_c | HisKA |
| CAZyme | HRGMv2_2390_1 | HRGMv2_2390_1_120 | 128489 | 133960 | + | GH101 |
| NULL(UNKNOWN) | HRGMv2_2390_1 | HRGMv2_2390_1_121 | 133982 | 134128 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2390_1 | HRGMv2_2390_1_122 | 134245 | 135654 | + | 2.A.25.1.3 |
Gene ID: HRGMv2_2390_1_117
Type: TC
Location: 125137 - 125703 (-)
Type: TC
Location: 125137 - 125703 (-)
Gene ID: HRGMv2_2390_1_118
Type: TF
Location: 126026 - 126778 (+)
Type: TF
Location: 126026 - 126778 (+)
Gene ID: HRGMv2_2390_1_119
Type: STP
Location: 126782 - 128284 (+)
Type: STP
Location: 126782 - 128284 (+)
Gene ID: HRGMv2_2390_1_120
Type: CAZyme
Location: 128489 - 133960 (+)
Type: CAZyme
Location: 128489 - 133960 (+)
Gene ID: HRGMv2_2390_1_121
Type:
Location: 133982 - 134128 (+)
Type:
Location: 133982 - 134128 (+)
Gene ID: HRGMv2_2390_1_122
Type: TC
Location: 134245 - 135654 (+)
Type: TC
Location: 134245 - 135654 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.