Cluster: HRGMv2_2390_CGC19
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2390
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2390_13 | HRGMv2_2390_13_27 | 31146 | 32573 | - | GH32 |
| TC | HRGMv2_2390_13 | HRGMv2_2390_13_28 | 32570 | 34498 | - | 4.A.1.2.12 |
| TF | HRGMv2_2390_13 | HRGMv2_2390_13_29 | 34935 | 35972 | - | LacI |
| CAZyme | HRGMv2_2390_13 | HRGMv2_2390_13_30 | 36134 | 41089 | - | CBM32 | CBM32 | GH20 |
| CAZyme | HRGMv2_2390_13 | HRGMv2_2390_13_31 | 41454 | 46229 | - | GH29 |
| pfam | HRGMv2_2390_13 | HRGMv2_2390_13_32 | 46821 | 48503 | - | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_2390_13 | HRGMv2_2390_13_33 | 48640 | 52068 | - | CBM4 | CBM4 | CBM4 | GH16_3 |
| CAZyme | HRGMv2_2390_13 | HRGMv2_2390_13_34 | 52071 | 54521 | - | GH3 |
| TC | HRGMv2_2390_13 | HRGMv2_2390_13_35 | 54648 | 55493 | - | 3.A.1.1.20 |
| TC | HRGMv2_2390_13 | HRGMv2_2390_13_36 | 55490 | 56443 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2390_13 | HRGMv2_2390_13_37 | 56515 | 57891 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2390_13 | HRGMv2_2390_13_38 | 58136 | 60835 | + | GH94 |
| CAZyme | HRGMv2_2390_13 | HRGMv2_2390_13_39 | 60863 | 63274 | + | GH94 |
Gene ID: HRGMv2_2390_13_27
Type: CAZyme
Location: 31146 - 32573 (-)
Type: CAZyme
Location: 31146 - 32573 (-)
Gene ID: HRGMv2_2390_13_28
Type: TC
Location: 32570 - 34498 (-)
Type: TC
Location: 32570 - 34498 (-)
Gene ID: HRGMv2_2390_13_29
Type: TF
Location: 34935 - 35972 (-)
Type: TF
Location: 34935 - 35972 (-)
Gene ID: HRGMv2_2390_13_30
Type: CAZyme
Location: 36134 - 41089 (-)
Type: CAZyme
Location: 36134 - 41089 (-)
Gene ID: HRGMv2_2390_13_31
Type: CAZyme
Location: 41454 - 46229 (-)
Type: CAZyme
Location: 41454 - 46229 (-)
Gene ID: HRGMv2_2390_13_32
Type: pfam
Location: 46821 - 48503 (-)
Type: pfam
Location: 46821 - 48503 (-)
Gene ID: HRGMv2_2390_13_33
Type: CAZyme
Location: 48640 - 52068 (-)
Type: CAZyme
Location: 48640 - 52068 (-)
Gene ID: HRGMv2_2390_13_34
Type: CAZyme
Location: 52071 - 54521 (-)
Type: CAZyme
Location: 52071 - 54521 (-)
Gene ID: HRGMv2_2390_13_35
Type: TC
Location: 54648 - 55493 (-)
Type: TC
Location: 54648 - 55493 (-)
Gene ID: HRGMv2_2390_13_36
Type: TC
Location: 55490 - 56443 (-)
Type: TC
Location: 55490 - 56443 (-)
Gene ID: HRGMv2_2390_13_37
Type:
Location: 56515 - 57891 (-)
Type:
Location: 56515 - 57891 (-)
Gene ID: HRGMv2_2390_13_38
Type: CAZyme
Location: 58136 - 60835 (+)
Type: CAZyme
Location: 58136 - 60835 (+)
Gene ID: HRGMv2_2390_13_39
Type: CAZyme
Location: 60863 - 63274 (+)
Type: CAZyme
Location: 60863 - 63274 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.