Cluster: HRGMv2_2390_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2390
- CGC Family ID: CGCFAM_00005
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2390_10 | HRGMv2_2390_10_43 | 43507 | 44670 | + | GT4 |
| CAZyme | HRGMv2_2390_10 | HRGMv2_2390_10_44 | 44667 | 45599 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2390_10 | HRGMv2_2390_10_45 | 45571 | 46848 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2390_10 | HRGMv2_2390_10_46 | 46848 | 47606 | + | ABC2_membrane |
| TC | HRGMv2_2390_10 | HRGMv2_2390_10_47 | 47644 | 48435 | + | 3.A.1.103.4 |
| pfam | HRGMv2_2390_10 | HRGMv2_2390_10_48 | 48432 | 50465 | + | Hydrolase |
| TC | HRGMv2_2390_10 | HRGMv2_2390_10_49 | 50543 | 51934 | + | 9.B.18.1.3 |
Gene ID: HRGMv2_2390_10_43
Type: CAZyme
Location: 43507 - 44670 (+)
Type: CAZyme
Location: 43507 - 44670 (+)
Gene ID: HRGMv2_2390_10_44
Type: CAZyme
Location: 44667 - 45599 (+)
Type: CAZyme
Location: 44667 - 45599 (+)
Gene ID: HRGMv2_2390_10_45
Type:
Location: 45571 - 46848 (+)
Type:
Location: 45571 - 46848 (+)
Gene ID: HRGMv2_2390_10_46
Type: pfam
Location: 46848 - 47606 (+)
Type: pfam
Location: 46848 - 47606 (+)
Gene ID: HRGMv2_2390_10_47
Type: TC
Location: 47644 - 48435 (+)
Type: TC
Location: 47644 - 48435 (+)
Gene ID: HRGMv2_2390_10_48
Type: pfam
Location: 48432 - 50465 (+)
Type: pfam
Location: 48432 - 50465 (+)
Gene ID: HRGMv2_2390_10_49
Type: TC
Location: 50543 - 51934 (+)
Type: TC
Location: 50543 - 51934 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.