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Cluster: HRGMv2_2390_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2390_1 HRGMv2_2390_1_63 48536 49876 + 2.A.66.1.37
CAZyme HRGMv2_2390_1 HRGMv2_2390_1_64 49996 52875 - GH3
pfam HRGMv2_2390_1 HRGMv2_2390_1_65 53075 54409 - HATPase_c_5
TF HRGMv2_2390_1 HRGMv2_2390_1_66 54406 55113 - LytTR
TC HRGMv2_2390_1 HRGMv2_2390_1_67 55315 57918 + 3.A.9.1.2
pfam HRGMv2_2390_1 HRGMv2_2390_1_68 57933 59231 + IMS | IMS_C
TC HRGMv2_2390_1 HRGMv2_2390_1_69 59228 60286 + 9.B.97.1.2
TC HRGMv2_2390_1 HRGMv2_2390_1_70 60767 62170 - 2.A.25.1.5
pfam HRGMv2_2390_1 HRGMv2_2390_1_71 62431 63948 + Mur_ligase | Mur_ligase_C | Mur_ligase_M
TC HRGMv2_2390_1 HRGMv2_2390_1_72 63953 66181 + 3.A.11.3.1
Gene ID: HRGMv2_2390_1_63
Type: TC
Location: 48536 - 49876 (+)
Gene ID: HRGMv2_2390_1_64
Type: CAZyme
Location: 49996 - 52875 (-)
Gene ID: HRGMv2_2390_1_65
Type: pfam
Location: 53075 - 54409 (-)
Gene ID: HRGMv2_2390_1_66
Type: TF
Location: 54406 - 55113 (-)
Gene ID: HRGMv2_2390_1_67
Type: TC
Location: 55315 - 57918 (+)
Gene ID: HRGMv2_2390_1_68
Type: pfam
Location: 57933 - 59231 (+)
Gene ID: HRGMv2_2390_1_69
Type: TC
Location: 59228 - 60286 (+)
Gene ID: HRGMv2_2390_1_70
Type: TC
Location: 60767 - 62170 (-)
Gene ID: HRGMv2_2390_1_71
Type: pfam
Location: 62431 - 63948 (+)
Gene ID: HRGMv2_2390_1_72
Type: TC
Location: 63953 - 66181 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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