Cluster: HRGMv2_2377_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2377
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2377_4 | HRGMv2_2377_4_80 | 77890 | 79131 | - | GH28 |
| TC | HRGMv2_2377_4 | HRGMv2_2377_4_81 | 79166 | 80812 | - | 3.A.1.135.9 |
| TC | HRGMv2_2377_4 | HRGMv2_2377_4_82 | 80824 | 82551 | - | 3.A.1.106.8 |
| TF | HRGMv2_2377_4 | HRGMv2_2377_4_83 | 82541 | 83044 | - | MarR |
| TC | HRGMv2_2377_4 | HRGMv2_2377_4_84 | 83243 | 84511 | - | 1.B.52.2.1 |
| pfam | HRGMv2_2377_4 | HRGMv2_2377_4_85 | 84650 | 85183 | - | His_Phos_1 |
| CAZyme | HRGMv2_2377_4 | HRGMv2_2377_4_86 | 85276 | 86295 | - | GT2 |
Gene ID: HRGMv2_2377_4_80
Type: CAZyme
Location: 77890 - 79131 (-)
Type: CAZyme
Location: 77890 - 79131 (-)
Gene ID: HRGMv2_2377_4_81
Type: TC
Location: 79166 - 80812 (-)
Type: TC
Location: 79166 - 80812 (-)
Gene ID: HRGMv2_2377_4_82
Type: TC
Location: 80824 - 82551 (-)
Type: TC
Location: 80824 - 82551 (-)
Gene ID: HRGMv2_2377_4_83
Type: TF
Location: 82541 - 83044 (-)
Type: TF
Location: 82541 - 83044 (-)
Gene ID: HRGMv2_2377_4_84
Type: TC
Location: 83243 - 84511 (-)
Type: TC
Location: 83243 - 84511 (-)
Gene ID: HRGMv2_2377_4_85
Type: pfam
Location: 84650 - 85183 (-)
Type: pfam
Location: 84650 - 85183 (-)
Gene ID: HRGMv2_2377_4_86
Type: CAZyme
Location: 85276 - 86295 (-)
Type: CAZyme
Location: 85276 - 86295 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900547255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.