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Cluster: HRGMv2_2377_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2377_2 HRGMv2_2377_2_50 54105 55433 - 2.A.66.1.33
STP HRGMv2_2377_2 HRGMv2_2377_2_51 55619 56176 + TetR_N
pfam HRGMv2_2377_2 HRGMv2_2377_2_52 56421 58394 + MCRA | NAD_binding_8
TC HRGMv2_2377_2 HRGMv2_2377_2_53 58789 59814 + 8.A.59.4.2
STP HRGMv2_2377_2 HRGMv2_2377_2_54 59832 62609 + HATPase_c | HisKA | Response_reg
TC HRGMv2_2377_2 HRGMv2_2377_2_55 62606 65278 + 2.A.21.9.2
STP HRGMv2_2377_2 HRGMv2_2377_2_56 65432 66043 + TetR_N
pfam HRGMv2_2377_2 HRGMv2_2377_2_57 66099 67571 + DUF6937 | DUF6938
TC HRGMv2_2377_2 HRGMv2_2377_2_58 67574 68977 + 2.A.2.1.1
CAZyme HRGMv2_2377_2 HRGMv2_2377_2_59 69012 71411 + GH36
pfam HRGMv2_2377_2 HRGMv2_2377_2_60 71389 72756 + GHMP_kinases_N | GalKase_gal_bdg
TC HRGMv2_2377_2 HRGMv2_2377_2_61 73382 74878 + 2.A.21.2.5
Gene ID: HRGMv2_2377_2_50
Type: TC
Location: 54105 - 55433 (-)
Gene ID: HRGMv2_2377_2_51
Type: STP
Location: 55619 - 56176 (+)
Gene ID: HRGMv2_2377_2_52
Type: pfam
Location: 56421 - 58394 (+)
Gene ID: HRGMv2_2377_2_53
Type: TC
Location: 58789 - 59814 (+)
Gene ID: HRGMv2_2377_2_54
Type: STP
Location: 59832 - 62609 (+)
Gene ID: HRGMv2_2377_2_55
Type: TC
Location: 62606 - 65278 (+)
Gene ID: HRGMv2_2377_2_56
Type: STP
Location: 65432 - 66043 (+)
Gene ID: HRGMv2_2377_2_57
Type: pfam
Location: 66099 - 67571 (+)
Gene ID: HRGMv2_2377_2_58
Type: TC
Location: 67574 - 68977 (+)
Gene ID: HRGMv2_2377_2_59
Type: CAZyme
Location: 69012 - 71411 (+)
Gene ID: HRGMv2_2377_2_60
Type: pfam
Location: 71389 - 72756 (+)
Gene ID: HRGMv2_2377_2_61
Type: TC
Location: 73382 - 74878 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2377_2_58 vegetarian > omnivore 1.47128 0.01285

🧭 Explore Read Mapping of CGC

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