Cluster: HRGMv2_2377_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2377
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2377_11 | HRGMv2_2377_11_60 | 68605 | 70317 | + | 3.A.1.106.2 |
| TF | HRGMv2_2377_11 | HRGMv2_2377_11_61 | 70559 | 71290 | + | HTH_3 |
| TC | HRGMv2_2377_11 | HRGMv2_2377_11_62 | 71383 | 74946 | + | 8.A.59.4.1 |
| pfam | HRGMv2_2377_11 | HRGMv2_2377_11_63 | 74964 | 76160 | + | Bmp |
| TC | HRGMv2_2377_11 | HRGMv2_2377_11_64 | 76296 | 77297 | + | 8.A.21.2.2 |
| CAZyme | HRGMv2_2377_11 | HRGMv2_2377_11_65 | 77443 | 78885 | + | CE12 |
Gene ID: HRGMv2_2377_11_60
Type: TC
Location: 68605 - 70317 (+)
Type: TC
Location: 68605 - 70317 (+)
Gene ID: HRGMv2_2377_11_61
Type: TF
Location: 70559 - 71290 (+)
Type: TF
Location: 70559 - 71290 (+)
Gene ID: HRGMv2_2377_11_62
Type: TC
Location: 71383 - 74946 (+)
Type: TC
Location: 71383 - 74946 (+)
Gene ID: HRGMv2_2377_11_63
Type: pfam
Location: 74964 - 76160 (+)
Type: pfam
Location: 74964 - 76160 (+)
Gene ID: HRGMv2_2377_11_64
Type: TC
Location: 76296 - 77297 (+)
Type: TC
Location: 76296 - 77297 (+)
Gene ID: HRGMv2_2377_11_65
Type: CAZyme
Location: 77443 - 78885 (+)
Type: CAZyme
Location: 77443 - 78885 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900547255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.