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Cluster: HRGMv2_2344_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2344_25 HRGMv2_2344_25_2 2101 3225 + GH31_4
TC HRGMv2_2344_25 HRGMv2_2344_25_3 3218 5089 + 8.A.59.2.1
TC HRGMv2_2344_25 HRGMv2_2344_25_4 5255 6706 + 3.A.1.1.29
TC HRGMv2_2344_25 HRGMv2_2344_25_5 6720 7685 + 3.A.1.1.29
pfam HRGMv2_2344_25 HRGMv2_2344_25_6 7823 9625 + SBP_bac_1 | SBP_bac_8
TC HRGMv2_2344_25 HRGMv2_2344_25_7 9755 10399 + 9.B.28.1.2
peptidase HRGMv2_2344_25 HRGMv2_2344_25_8 10419 11243 + S09.UPW
TF HRGMv2_2344_25 HRGMv2_2344_25_9 11264 12844 - HTH_AraC
CAZyme HRGMv2_2344_25 HRGMv2_2344_25_10 12930 14420 - GH29
CAZyme HRGMv2_2344_25 HRGMv2_2344_25_11 14538 16553 - GH42
Gene ID: HRGMv2_2344_25_2
Type: CAZyme
Location: 2101 - 3225 (+)
Gene ID: HRGMv2_2344_25_3
Type: TC
Location: 3218 - 5089 (+)
Gene ID: HRGMv2_2344_25_4
Type: TC
Location: 5255 - 6706 (+)
Gene ID: HRGMv2_2344_25_5
Type: TC
Location: 6720 - 7685 (+)
Gene ID: HRGMv2_2344_25_6
Type: pfam
Location: 7823 - 9625 (+)
Gene ID: HRGMv2_2344_25_7
Type: TC
Location: 9755 - 10399 (+)
Gene ID: HRGMv2_2344_25_8
Type: peptidase
Location: 10419 - 11243 (+)
Gene ID: HRGMv2_2344_25_9
Type: TF
Location: 11264 - 12844 (-)
Gene ID: HRGMv2_2344_25_10
Type: CAZyme
Location: 12930 - 14420 (-)
Gene ID: HRGMv2_2344_25_11
Type: CAZyme
Location: 14538 - 16553 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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