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Cluster: HRGMv2_2344_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2344_1 HRGMv2_2344_1_345 382739 383902 - GH25
pfam HRGMv2_2344_1 HRGMv2_2344_1_346 383926 384597 - DUF1905
TF HRGMv2_2344_1 HRGMv2_2344_1_347 384691 385554 - HTH_AraC
CAZyme HRGMv2_2344_1 HRGMv2_2344_1_348 385547 386656 - GH25
TC HRGMv2_2344_1 HRGMv2_2344_1_349 386724 387575 - 2.A.115.1.5
STP HRGMv2_2344_1 HRGMv2_2344_1_350 387689 388912 - ACT | PALP
TC HRGMv2_2344_1 HRGMv2_2344_1_351 388912 389871 - 3.A.5.1.1
pfam HRGMv2_2344_1 HRGMv2_2344_1_352 389871 393431 - SMC_N | SMC_hinge | AAA_15 | AAA_21 | AAA_23
pfam HRGMv2_2344_1 HRGMv2_2344_1_353 393462 394148 - dsrm | Ribonuclease_3 | Ribonucleas_3_3
TC HRGMv2_2344_1 HRGMv2_2344_1_354 394203 394433 - 3.D.1.6.2
Gene ID: HRGMv2_2344_1_345
Type: CAZyme
Location: 382739 - 383902 (-)
Gene ID: HRGMv2_2344_1_346
Type: pfam
Location: 383926 - 384597 (-)
Gene ID: HRGMv2_2344_1_347
Type: TF
Location: 384691 - 385554 (-)
Gene ID: HRGMv2_2344_1_348
Type: CAZyme
Location: 385547 - 386656 (-)
Gene ID: HRGMv2_2344_1_349
Type: TC
Location: 386724 - 387575 (-)
Gene ID: HRGMv2_2344_1_350
Type: STP
Location: 387689 - 388912 (-)
Gene ID: HRGMv2_2344_1_351
Type: TC
Location: 388912 - 389871 (-)
Gene ID: HRGMv2_2344_1_352
Type: pfam
Location: 389871 - 393431 (-)
Gene ID: HRGMv2_2344_1_353
Type: pfam
Location: 393462 - 394148 (-)
Gene ID: HRGMv2_2344_1_354
Type: TC
Location: 394203 - 394433 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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