Cluster: HRGMv2_2344_CGC39
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2344
- CGC Family ID: CGCFAM_00037
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2344_17 | HRGMv2_2344_17_17 | 19317 | 20828 | + | 2.A.50.2.1 |
| NULL(UNKNOWN) | HRGMv2_2344_17 | HRGMv2_2344_17_18 | 20864 | 21907 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2344_17 | HRGMv2_2344_17_19 | 21936 | 22691 | + | Exo_endo_phos |
| CAZyme | HRGMv2_2344_17 | HRGMv2_2344_17_20 | 22792 | 24477 | - | CBM34 | GH13_20 |
| TC | HRGMv2_2344_17 | HRGMv2_2344_17_21 | 24505 | 25350 | - | 3.A.1.1.27 |
| TC | HRGMv2_2344_17 | HRGMv2_2344_17_22 | 25347 | 26771 | - | 3.A.1.1.27 |
Gene ID: HRGMv2_2344_17_17
Type: TC
Location: 19317 - 20828 (+)
Type: TC
Location: 19317 - 20828 (+)
Gene ID: HRGMv2_2344_17_18
Type:
Location: 20864 - 21907 (+)
Type:
Location: 20864 - 21907 (+)
Gene ID: HRGMv2_2344_17_19
Type: pfam
Location: 21936 - 22691 (+)
Type: pfam
Location: 21936 - 22691 (+)
Gene ID: HRGMv2_2344_17_20
Type: CAZyme
Location: 22792 - 24477 (-)
Type: CAZyme
Location: 22792 - 24477 (-)
Gene ID: HRGMv2_2344_17_21
Type: TC
Location: 24505 - 25350 (-)
Type: TC
Location: 24505 - 25350 (-)
Gene ID: HRGMv2_2344_17_22
Type: TC
Location: 25347 - 26771 (-)
Type: TC
Location: 25347 - 26771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3282
Species
UBA3282 sp934401915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.