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Cluster: HRGMv2_2344_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2344_15 HRGMv2_2344_15_38 47925 50042 + 9.B.106.2.2
pfam HRGMv2_2344_15 HRGMv2_2344_15_39 50088 50966 + MMR_HSR1 | RsgA_GTPase | RsgA_N
CAZyme HRGMv2_2344_15 HRGMv2_2344_15_40 51130 52866 + CE17
CAZyme HRGMv2_2344_15 HRGMv2_2344_15_41 52881 54440 + CBM91 | GH43_12
TC HRGMv2_2344_15 HRGMv2_2344_15_42 54443 56206 + 8.A.59.2.1
TF HRGMv2_2344_15 HRGMv2_2344_15_43 56219 57817 + HTH_AraC | HTH_AraC
TC HRGMv2_2344_15 HRGMv2_2344_15_44 57963 59666 + 3.A.1.1.29
TC HRGMv2_2344_15 HRGMv2_2344_15_45 59776 60732 + 3.A.1.1.29
TC HRGMv2_2344_15 HRGMv2_2344_15_46 60745 61641 + 3.A.1.1.29
CAZyme HRGMv2_2344_15 HRGMv2_2344_15_47 61673 62812 + GH8
TC HRGMv2_2344_15 HRGMv2_2344_15_48 62925 64562 + 3.A.1.1.29
CAZyme HRGMv2_2344_15 HRGMv2_2344_15_49 64599 66512 + CE1
CAZyme HRGMv2_2344_15 HRGMv2_2344_15_50 66711 68252 + GH13_44
Gene ID: HRGMv2_2344_15_38
Type: TC
Location: 47925 - 50042 (+)
Gene ID: HRGMv2_2344_15_39
Type: pfam
Location: 50088 - 50966 (+)
Gene ID: HRGMv2_2344_15_40
Type: CAZyme
Location: 51130 - 52866 (+)
Gene ID: HRGMv2_2344_15_41
Type: CAZyme
Location: 52881 - 54440 (+)
Gene ID: HRGMv2_2344_15_42
Type: TC
Location: 54443 - 56206 (+)
Gene ID: HRGMv2_2344_15_43
Type: TF
Location: 56219 - 57817 (+)
Gene ID: HRGMv2_2344_15_44
Type: TC
Location: 57963 - 59666 (+)
Gene ID: HRGMv2_2344_15_45
Type: TC
Location: 59776 - 60732 (+)
Gene ID: HRGMv2_2344_15_46
Type: TC
Location: 60745 - 61641 (+)
Gene ID: HRGMv2_2344_15_47
Type: CAZyme
Location: 61673 - 62812 (+)
Gene ID: HRGMv2_2344_15_48
Type: TC
Location: 62925 - 64562 (+)
Gene ID: HRGMv2_2344_15_49
Type: CAZyme
Location: 64599 - 66512 (+)
Gene ID: HRGMv2_2344_15_50
Type: CAZyme
Location: 66711 - 68252 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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