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Cluster: HRGMv2_2344_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2344_11 HRGMv2_2344_11_61 78855 81842 + GH25
pfam HRGMv2_2344_11 HRGMv2_2344_11_62 81905 82987 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
pfam HRGMv2_2344_11 HRGMv2_2344_11_63 83030 83899 + NTP_transferase | NTP_transf_3
CAZyme HRGMv2_2344_11 HRGMv2_2344_11_64 83889 85229 + GH25
pfam HRGMv2_2344_11 HRGMv2_2344_11_65 85250 85810 + dTDP_sugar_isom
TC HRGMv2_2344_11 HRGMv2_2344_11_66 85830 86858 + 3.A.1.104.1
TC HRGMv2_2344_11 HRGMv2_2344_11_67 86889 88211 + 3.A.1.103.6
pfam HRGMv2_2344_11 HRGMv2_2344_11_68 88258 90462 + PCMT | CMAS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
CAZyme HRGMv2_2344_11 HRGMv2_2344_11_69 90465 92855 + GT2
CAZyme HRGMv2_2344_11 HRGMv2_2344_11_70 92825 94897 + GT2 | GT2
pfam HRGMv2_2344_11 HRGMv2_2344_11_71 95125 96846 + PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2344_11 HRGMv2_2344_11_72 96944 98347 + GT2
CAZyme HRGMv2_2344_11 HRGMv2_2344_11_73 98403 99371 + GT2
TC HRGMv2_2344_11 HRGMv2_2344_11_74 99451 100860 + 9.B.18.1.1
pfam HRGMv2_2344_11 HRGMv2_2344_11_75 100997 102298 + LytR_cpsA_psr
CAZyme HRGMv2_2344_11 HRGMv2_2344_11_76 102368 103426 + GT2
Gene ID: HRGMv2_2344_11_61
Type: CAZyme
Location: 78855 - 81842 (+)
Gene ID: HRGMv2_2344_11_62
Type: pfam
Location: 81905 - 82987 (+)
Gene ID: HRGMv2_2344_11_63
Type: pfam
Location: 83030 - 83899 (+)
Gene ID: HRGMv2_2344_11_64
Type: CAZyme
Location: 83889 - 85229 (+)
Gene ID: HRGMv2_2344_11_65
Type: pfam
Location: 85250 - 85810 (+)
Gene ID: HRGMv2_2344_11_66
Type: TC
Location: 85830 - 86858 (+)
Gene ID: HRGMv2_2344_11_67
Type: TC
Location: 86889 - 88211 (+)
Gene ID: HRGMv2_2344_11_68
Type: pfam
Location: 88258 - 90462 (+)
Gene ID: HRGMv2_2344_11_69
Type: CAZyme
Location: 90465 - 92855 (+)
Gene ID: HRGMv2_2344_11_70
Type: CAZyme
Location: 92825 - 94897 (+)
Gene ID: HRGMv2_2344_11_71
Type: pfam
Location: 95125 - 96846 (+)
Gene ID: HRGMv2_2344_11_72
Type: CAZyme
Location: 96944 - 98347 (+)
Gene ID: HRGMv2_2344_11_73
Type: CAZyme
Location: 98403 - 99371 (+)
Gene ID: HRGMv2_2344_11_74
Type: TC
Location: 99451 - 100860 (+)
Gene ID: HRGMv2_2344_11_75
Type: pfam
Location: 100997 - 102298 (+)
Gene ID: HRGMv2_2344_11_76
Type: CAZyme
Location: 102368 - 103426 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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