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Cluster: HRGMv2_2344_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2344_10 HRGMv2_2344_10_28 32013 32711 + 3.A.1.132.6
TC HRGMv2_2344_10 HRGMv2_2344_10_29 32705 33499 + 3.A.1.132.6
TF HRGMv2_2344_10 HRGMv2_2344_10_30 33593 34258 - GntR
pfam HRGMv2_2344_10 HRGMv2_2344_10_31 34557 35630 + UxuA
TC HRGMv2_2344_10 HRGMv2_2344_10_32 35670 36602 + 3.A.1.1.10
TC HRGMv2_2344_10 HRGMv2_2344_10_33 36615 37487 + 3.A.1.1.29
STP HRGMv2_2344_10 HRGMv2_2344_10_34 37534 39264 + SBP_bac_1
CAZyme HRGMv2_2344_10 HRGMv2_2344_10_35 39365 42661 + GH2
CAZyme HRGMv2_2344_10 HRGMv2_2344_10_36 42679 44535 + CE20 | CE20
Gene ID: HRGMv2_2344_10_28
Type: TC
Location: 32013 - 32711 (+)
Gene ID: HRGMv2_2344_10_29
Type: TC
Location: 32705 - 33499 (+)
Gene ID: HRGMv2_2344_10_30
Type: TF
Location: 33593 - 34258 (-)
Gene ID: HRGMv2_2344_10_31
Type: pfam
Location: 34557 - 35630 (+)
Gene ID: HRGMv2_2344_10_32
Type: TC
Location: 35670 - 36602 (+)
Gene ID: HRGMv2_2344_10_33
Type: TC
Location: 36615 - 37487 (+)
Gene ID: HRGMv2_2344_10_34
Type: STP
Location: 37534 - 39264 (+)
Gene ID: HRGMv2_2344_10_35
Type: CAZyme
Location: 39365 - 42661 (+)
Gene ID: HRGMv2_2344_10_36
Type: CAZyme
Location: 42679 - 44535 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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