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Cluster: HRGMv2_2344_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2344_8 HRGMv2_2344_8_13 16689 17873 - 2.A.37.2.2
TF HRGMv2_2344_8 HRGMv2_2344_8_14 18675 19556 + HTH_AraC
TC HRGMv2_2344_8 HRGMv2_2344_8_15 19635 21410 + 8.A.59.2.1
TF HRGMv2_2344_8 HRGMv2_2344_8_16 21431 22183 + HTH_AraC | HTH_AraC
TC HRGMv2_2344_8 HRGMv2_2344_8_17 22342 23568 + 3.A.1.20.2
TC HRGMv2_2344_8 HRGMv2_2344_8_18 23645 25357 + 3.A.1.20.2
TC HRGMv2_2344_8 HRGMv2_2344_8_19 25359 26435 + 3.A.1.11.8
TC HRGMv2_2344_8 HRGMv2_2344_8_20 26499 27182 + 9.B.20.1.4
CAZyme HRGMv2_2344_8 HRGMv2_2344_8_21 27338 29296 + GH127
Gene ID: HRGMv2_2344_8_13
Type: TC
Location: 16689 - 17873 (-)
Gene ID: HRGMv2_2344_8_14
Type: TF
Location: 18675 - 19556 (+)
Gene ID: HRGMv2_2344_8_15
Type: TC
Location: 19635 - 21410 (+)
Gene ID: HRGMv2_2344_8_16
Type: TF
Location: 21431 - 22183 (+)
Gene ID: HRGMv2_2344_8_17
Type: TC
Location: 22342 - 23568 (+)
Gene ID: HRGMv2_2344_8_18
Type: TC
Location: 23645 - 25357 (+)
Gene ID: HRGMv2_2344_8_19
Type: TC
Location: 25359 - 26435 (+)
Gene ID: HRGMv2_2344_8_20
Type: TC
Location: 26499 - 27182 (+)
Gene ID: HRGMv2_2344_8_21
Type: CAZyme
Location: 27338 - 29296 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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