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Cluster: HRGMv2_2344_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2344_7 HRGMv2_2344_7_45 48498 49196 + 3.A.1.3.15
TC HRGMv2_2344_7 HRGMv2_2344_7_46 49247 49969 + 3.A.1.3.24
TC HRGMv2_2344_7 HRGMv2_2344_7_47 50098 51012 + 3.A.1.3.2
TF HRGMv2_2344_7 HRGMv2_2344_7_48 51265 52290 + LacI
CAZyme HRGMv2_2344_7 HRGMv2_2344_7_49 52607 54130 + CBM35 | GH26
pfam HRGMv2_2344_7 HRGMv2_2344_7_50 54153 54800 + DUF624
STP HRGMv2_2344_7 HRGMv2_2344_7_51 54847 57837 + SBP_bac_1
TC HRGMv2_2344_7 HRGMv2_2344_7_52 57852 58805 + 3.A.1.1.11
TC HRGMv2_2344_7 HRGMv2_2344_7_53 58805 59683 + 3.A.1.1.39
Gene ID: HRGMv2_2344_7_45
Type: TC
Location: 48498 - 49196 (+)
Gene ID: HRGMv2_2344_7_46
Type: TC
Location: 49247 - 49969 (+)
Gene ID: HRGMv2_2344_7_47
Type: TC
Location: 50098 - 51012 (+)
Gene ID: HRGMv2_2344_7_48
Type: TF
Location: 51265 - 52290 (+)
Gene ID: HRGMv2_2344_7_49
Type: CAZyme
Location: 52607 - 54130 (+)
Gene ID: HRGMv2_2344_7_50
Type: pfam
Location: 54153 - 54800 (+)
Gene ID: HRGMv2_2344_7_51
Type: STP
Location: 54847 - 57837 (+)
Gene ID: HRGMv2_2344_7_52
Type: TC
Location: 57852 - 58805 (+)
Gene ID: HRGMv2_2344_7_53
Type: TC
Location: 58805 - 59683 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2344_7_53 vegetarian > vegan 1.47106 0.02258

🧭 Explore Read Mapping of CGC

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