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Cluster: HRGMv2_2344_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2344_7 HRGMv2_2344_7_23 24580 26238 + CBM34 | GH13_20
STP HRGMv2_2344_7 HRGMv2_2344_7_24 26278 27744 + SBP_bac_1
TC HRGMv2_2344_7 HRGMv2_2344_7_25 27761 29083 + 3.A.1.1.27
TC HRGMv2_2344_7 HRGMv2_2344_7_26 29080 29922 + 3.A.1.1.27
pfam HRGMv2_2344_7 HRGMv2_2344_7_27 30275 30811 + DUF1706
peptidase HRGMv2_2344_7 HRGMv2_2344_7_28 30814 31878 - S33.UPW
TC HRGMv2_2344_7 HRGMv2_2344_7_29 32061 32780 + 3.A.1.124.6
TC HRGMv2_2344_7 HRGMv2_2344_7_30 32767 33531 + 3.A.1.124.2
TC HRGMv2_2344_7 HRGMv2_2344_7_31 33528 34274 + 3.A.1.124.6
Gene ID: HRGMv2_2344_7_23
Type: CAZyme
Location: 24580 - 26238 (+)
Gene ID: HRGMv2_2344_7_24
Type: STP
Location: 26278 - 27744 (+)
Gene ID: HRGMv2_2344_7_25
Type: TC
Location: 27761 - 29083 (+)
Gene ID: HRGMv2_2344_7_26
Type: TC
Location: 29080 - 29922 (+)
Gene ID: HRGMv2_2344_7_27
Type: pfam
Location: 30275 - 30811 (+)
Gene ID: HRGMv2_2344_7_28
Type: peptidase
Location: 30814 - 31878 (-)
Gene ID: HRGMv2_2344_7_29
Type: TC
Location: 32061 - 32780 (+)
Gene ID: HRGMv2_2344_7_30
Type: TC
Location: 32767 - 33531 (+)
Gene ID: HRGMv2_2344_7_31
Type: TC
Location: 33528 - 34274 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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