Cluster: HRGMv2_2326_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2326
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2326_1 | HRGMv2_2326_1_379 | 412216 | 413169 | + | 3.A.1.1.10 |
| STP | HRGMv2_2326_1 | HRGMv2_2326_1_380 | 413190 | 414935 | + | SBP_bac_1 |
| TC | HRGMv2_2326_1 | HRGMv2_2326_1_381 | 414993 | 415895 | + | 3.A.1.1.29 |
| STP | HRGMv2_2326_1 | HRGMv2_2326_1_382 | 416013 | 416957 | + | PfkB |
| CAZyme | HRGMv2_2326_1 | HRGMv2_2326_1_383 | 416973 | 418331 | + | GH4 |
Gene ID: HRGMv2_2326_1_379
Type: TC
Location: 412216 - 413169 (+)
Type: TC
Location: 412216 - 413169 (+)
Gene ID: HRGMv2_2326_1_380
Type: STP
Location: 413190 - 414935 (+)
Type: STP
Location: 413190 - 414935 (+)
Gene ID: HRGMv2_2326_1_381
Type: TC
Location: 414993 - 415895 (+)
Type: TC
Location: 414993 - 415895 (+)
Gene ID: HRGMv2_2326_1_382
Type: STP
Location: 416013 - 416957 (+)
Type: STP
Location: 416013 - 416957 (+)
Gene ID: HRGMv2_2326_1_383
Type: CAZyme
Location: 416973 - 418331 (+)
Type: CAZyme
Location: 416973 - 418331 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp000432335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2326_1_379 | vegan > omnivore | 1.52848 | 0.01438 |
| HRGMv2_2326_1_379 | vegetarian > omnivore | 1.77313 | 0.03783 |