Cluster: HRGMv2_2326_CGC13
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2326
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_88 | 100940 | 101860 | - | 3.A.1.1.29 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_89 | 101878 | 102849 | - | 3.A.1.1.29 |
| STP | HRGMv2_2326_2 | HRGMv2_2326_2_90 | 102983 | 104464 | - | SBP_bac_1 |
| TF | HRGMv2_2326_2 | HRGMv2_2326_2_91 | 104793 | 106310 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_92 | 106282 | 108078 | - | 8.A.59.2.1 |
| CAZyme | HRGMv2_2326_2 | HRGMv2_2326_2_93 | 108187 | 111306 | - | GH38 |
| pfam | HRGMv2_2326_2 | HRGMv2_2326_2_94 | 111415 | 112512 | - | DHHW |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_95 | 112549 | 113943 | - | 2.A.50.2.1 |
| NULL(UNKNOWN) | HRGMv2_2326_2 | HRGMv2_2326_2_96 | 113945 | 114526 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2326_2 | HRGMv2_2326_2_97 | 114694 | 115749 | + | LacI |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_98 | 115804 | 116640 | - | 3.A.1.1.39 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_99 | 116630 | 117502 | - | 3.A.1.1.20 |
| STP | HRGMv2_2326_2 | HRGMv2_2326_2_100 | 117569 | 118897 | - | SBP_bac_1 |
| CAZyme | HRGMv2_2326_2 | HRGMv2_2326_2_101 | 119134 | 120933 | + | GH36 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_102 | 121063 | 122106 | - | 3.A.1.2.3 |
| STP | HRGMv2_2326_2 | HRGMv2_2326_2_103 | 122123 | 123085 | - | Peripla_BP_1 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_104 | 123075 | 124952 | - | 9.B.33.1.1 |
| TF | HRGMv2_2326_2 | HRGMv2_2326_2_105 | 124939 | 126549 | - | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_2326_2 | HRGMv2_2326_2_106 | 126573 | 127541 | - | URO-D |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_107 | 127837 | 129492 | - | 3.A.1.2.3 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_108 | 129507 | 131015 | - | 3.A.1.2.3 |
Gene ID: HRGMv2_2326_2_88
Type: TC
Location: 100940 - 101860 (-)
Type: TC
Location: 100940 - 101860 (-)
Gene ID: HRGMv2_2326_2_89
Type: TC
Location: 101878 - 102849 (-)
Type: TC
Location: 101878 - 102849 (-)
Gene ID: HRGMv2_2326_2_90
Type: STP
Location: 102983 - 104464 (-)
Type: STP
Location: 102983 - 104464 (-)
Gene ID: HRGMv2_2326_2_91
Type: TF
Location: 104793 - 106310 (-)
Type: TF
Location: 104793 - 106310 (-)
Gene ID: HRGMv2_2326_2_92
Type: TC
Location: 106282 - 108078 (-)
Type: TC
Location: 106282 - 108078 (-)
Gene ID: HRGMv2_2326_2_93
Type: CAZyme
Location: 108187 - 111306 (-)
Type: CAZyme
Location: 108187 - 111306 (-)
Gene ID: HRGMv2_2326_2_94
Type: pfam
Location: 111415 - 112512 (-)
Type: pfam
Location: 111415 - 112512 (-)
Gene ID: HRGMv2_2326_2_95
Type: TC
Location: 112549 - 113943 (-)
Type: TC
Location: 112549 - 113943 (-)
Gene ID: HRGMv2_2326_2_96
Type:
Location: 113945 - 114526 (-)
Type:
Location: 113945 - 114526 (-)
Gene ID: HRGMv2_2326_2_97
Type: TF
Location: 114694 - 115749 (+)
Type: TF
Location: 114694 - 115749 (+)
Gene ID: HRGMv2_2326_2_98
Type: TC
Location: 115804 - 116640 (-)
Type: TC
Location: 115804 - 116640 (-)
Gene ID: HRGMv2_2326_2_99
Type: TC
Location: 116630 - 117502 (-)
Type: TC
Location: 116630 - 117502 (-)
Gene ID: HRGMv2_2326_2_100
Type: STP
Location: 117569 - 118897 (-)
Type: STP
Location: 117569 - 118897 (-)
Gene ID: HRGMv2_2326_2_101
Type: CAZyme
Location: 119134 - 120933 (+)
Type: CAZyme
Location: 119134 - 120933 (+)
Gene ID: HRGMv2_2326_2_102
Type: TC
Location: 121063 - 122106 (-)
Type: TC
Location: 121063 - 122106 (-)
Gene ID: HRGMv2_2326_2_103
Type: STP
Location: 122123 - 123085 (-)
Type: STP
Location: 122123 - 123085 (-)
Gene ID: HRGMv2_2326_2_104
Type: TC
Location: 123075 - 124952 (-)
Type: TC
Location: 123075 - 124952 (-)
Gene ID: HRGMv2_2326_2_105
Type: TF
Location: 124939 - 126549 (-)
Type: TF
Location: 124939 - 126549 (-)
Gene ID: HRGMv2_2326_2_106
Type: pfam
Location: 126573 - 127541 (-)
Type: pfam
Location: 126573 - 127541 (-)
Gene ID: HRGMv2_2326_2_107
Type: TC
Location: 127837 - 129492 (-)
Type: TC
Location: 127837 - 129492 (-)
Gene ID: HRGMv2_2326_2_108
Type: TC
Location: 129507 - 131015 (-)
Type: TC
Location: 129507 - 131015 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp000432335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.