Cluster: HRGMv2_2325_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2325
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2325_33 | HRGMv2_2325_33_9 | 8569 | 10332 | - | GH23 |
| peptidase | HRGMv2_2325_33 | HRGMv2_2325_33_10 | 10366 | 11139 | - | C60.UPB |
| pfam | HRGMv2_2325_33 | HRGMv2_2325_33_11 | 11154 | 11558 | - | DUF6075 |
| TC | HRGMv2_2325_33 | HRGMv2_2325_33_12 | 11572 | 13905 | - | 3.A.7.7.1 |
Gene ID: HRGMv2_2325_33_9
Type: CAZyme
Location: 8569 - 10332 (-)
Type: CAZyme
Location: 8569 - 10332 (-)
Gene ID: HRGMv2_2325_33_10
Type: peptidase
Location: 10366 - 11139 (-)
Type: peptidase
Location: 10366 - 11139 (-)
Gene ID: HRGMv2_2325_33_11
Type: pfam
Location: 11154 - 11558 (-)
Type: pfam
Location: 11154 - 11558 (-)
Gene ID: HRGMv2_2325_33_12
Type: TC
Location: 11572 - 13905 (-)
Type: TC
Location: 11572 - 13905 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp900753685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2325_33_9 | vegetarian > vegan | 1.11681 | 0.00566 |
| HRGMv2_2325_33_11 | vegetarian > vegan | 2.31297 | 0.00566 |