Cluster: HRGMv2_2325_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2325
- CGC Family ID: CGCFAM_00011
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2325_27 | HRGMv2_2325_27_2 | 546 | 1685 | + | GT4 |
| pfam | HRGMv2_2325_27 | HRGMv2_2325_27_3 | 1654 | 2589 | + | Glycos_transf_2 |
| CAZyme | HRGMv2_2325_27 | HRGMv2_2325_27_4 | 2599 | 4935 | + | GT2 |
| TC | HRGMv2_2325_27 | HRGMv2_2325_27_5 | 4953 | 6371 | + | 3.A.1.103.4 |
| TC | HRGMv2_2325_27 | HRGMv2_2325_27_6 | 6383 | 7114 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_2325_27 | HRGMv2_2325_27_7 | 7138 | 12174 | + | GT2 | GT4 | GT4 |
Gene ID: HRGMv2_2325_27_2
Type: CAZyme
Location: 546 - 1685 (+)
Type: CAZyme
Location: 546 - 1685 (+)
Gene ID: HRGMv2_2325_27_3
Type: pfam
Location: 1654 - 2589 (+)
Type: pfam
Location: 1654 - 2589 (+)
Gene ID: HRGMv2_2325_27_4
Type: CAZyme
Location: 2599 - 4935 (+)
Type: CAZyme
Location: 2599 - 4935 (+)
Gene ID: HRGMv2_2325_27_5
Type: TC
Location: 4953 - 6371 (+)
Type: TC
Location: 4953 - 6371 (+)
Gene ID: HRGMv2_2325_27_6
Type: TC
Location: 6383 - 7114 (+)
Type: TC
Location: 6383 - 7114 (+)
Gene ID: HRGMv2_2325_27_7
Type: CAZyme
Location: 7138 - 12174 (+)
Type: CAZyme
Location: 7138 - 12174 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp900753685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.