Cluster: HRGMv2_2325_CGC1
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2325
- CGC Family ID: CGCFAM_10004
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2325_1 | HRGMv2_2325_1_109 | 110210 | 110695 | - | 2.A.115.2.14 |
| CAZyme | HRGMv2_2325_1 | HRGMv2_2325_1_110 | 110855 | 111679 | + | CE4 |
| TC | HRGMv2_2325_1 | HRGMv2_2325_1_111 | 111701 | 113758 | - | 3.A.1.134.9 |
| TC | HRGMv2_2325_1 | HRGMv2_2325_1_112 | 113755 | 114519 | - | 3.A.1.134.4 |
| STP | HRGMv2_2325_1 | HRGMv2_2325_1_113 | 114634 | 115623 | - | HATPase_c | HisKA |
| TF | HRGMv2_2325_1 | HRGMv2_2325_1_114 | 115620 | 116288 | - | Trans_reg_C |
| CAZyme | HRGMv2_2325_1 | HRGMv2_2325_1_115 | 116429 | 117571 | - | CE9 |
| CAZyme | HRGMv2_2325_1 | HRGMv2_2325_1_116 | 117571 | 119025 | - | GH165 |
| pfam | HRGMv2_2325_1 | HRGMv2_2325_1_117 | 119044 | 119961 | - | DHDPS |
| pfam | HRGMv2_2325_1 | HRGMv2_2325_1_118 | 119990 | 120442 | - | DUF386 |
| TC | HRGMv2_2325_1 | HRGMv2_2325_1_119 | 120439 | 121458 | - | 3.A.1.5.29 |
| TC | HRGMv2_2325_1 | HRGMv2_2325_1_120 | 121460 | 122488 | - | 3.A.1.5.12 |
| TC | HRGMv2_2325_1 | HRGMv2_2325_1_121 | 122500 | 123390 | - | 3.A.1.5.20 |
| TC | HRGMv2_2325_1 | HRGMv2_2325_1_122 | 123408 | 124367 | - | 3.A.1.5.20 |
| TC | HRGMv2_2325_1 | HRGMv2_2325_1_123 | 124498 | 126108 | - | 3.A.1.5.18 |
Gene ID: HRGMv2_2325_1_109
Type: TC
Location: 110210 - 110695 (-)
Type: TC
Location: 110210 - 110695 (-)
Gene ID: HRGMv2_2325_1_110
Type: CAZyme
Location: 110855 - 111679 (+)
Type: CAZyme
Location: 110855 - 111679 (+)
Gene ID: HRGMv2_2325_1_111
Type: TC
Location: 111701 - 113758 (-)
Type: TC
Location: 111701 - 113758 (-)
Gene ID: HRGMv2_2325_1_112
Type: TC
Location: 113755 - 114519 (-)
Type: TC
Location: 113755 - 114519 (-)
Gene ID: HRGMv2_2325_1_113
Type: STP
Location: 114634 - 115623 (-)
Type: STP
Location: 114634 - 115623 (-)
Gene ID: HRGMv2_2325_1_114
Type: TF
Location: 115620 - 116288 (-)
Type: TF
Location: 115620 - 116288 (-)
Gene ID: HRGMv2_2325_1_115
Type: CAZyme
Location: 116429 - 117571 (-)
Type: CAZyme
Location: 116429 - 117571 (-)
Gene ID: HRGMv2_2325_1_116
Type: CAZyme
Location: 117571 - 119025 (-)
Type: CAZyme
Location: 117571 - 119025 (-)
Gene ID: HRGMv2_2325_1_117
Type: pfam
Location: 119044 - 119961 (-)
Type: pfam
Location: 119044 - 119961 (-)
Gene ID: HRGMv2_2325_1_118
Type: pfam
Location: 119990 - 120442 (-)
Type: pfam
Location: 119990 - 120442 (-)
Gene ID: HRGMv2_2325_1_119
Type: TC
Location: 120439 - 121458 (-)
Type: TC
Location: 120439 - 121458 (-)
Gene ID: HRGMv2_2325_1_120
Type: TC
Location: 121460 - 122488 (-)
Type: TC
Location: 121460 - 122488 (-)
Gene ID: HRGMv2_2325_1_121
Type: TC
Location: 122500 - 123390 (-)
Type: TC
Location: 122500 - 123390 (-)
Gene ID: HRGMv2_2325_1_122
Type: TC
Location: 123408 - 124367 (-)
Type: TC
Location: 123408 - 124367 (-)
Gene ID: HRGMv2_2325_1_123
Type: TC
Location: 124498 - 126108 (-)
Type: TC
Location: 124498 - 126108 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp900753685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.