Cluster: HRGMv2_2310_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2310
- CGC Family ID: CGCFAM_00039
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2310_14 | HRGMv2_2310_14_29 | 29956 | 30915 | + | GT2 |
| CAZyme | HRGMv2_2310_14 | HRGMv2_2310_14_30 | 30912 | 33107 | + | GT2 | GT2 |
| CAZyme | HRGMv2_2310_14 | HRGMv2_2310_14_31 | 33124 | 34134 | + | GT2 |
| TC | HRGMv2_2310_14 | HRGMv2_2310_14_32 | 34254 | 35675 | + | 9.B.18.1.1 |
| pfam | HRGMv2_2310_14 | HRGMv2_2310_14_33 | 35691 | 37736 | + | LytR_cpsA_psr |
| NULL(UNKNOWN) | HRGMv2_2310_14 | HRGMv2_2310_14_34 | 37891 | 38058 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2310_14 | HRGMv2_2310_14_35 | 38037 | 39398 | + | 2.A.27.2.1 |
Gene ID: HRGMv2_2310_14_29
Type: CAZyme
Location: 29956 - 30915 (+)
Type: CAZyme
Location: 29956 - 30915 (+)
Gene ID: HRGMv2_2310_14_30
Type: CAZyme
Location: 30912 - 33107 (+)
Type: CAZyme
Location: 30912 - 33107 (+)
Gene ID: HRGMv2_2310_14_31
Type: CAZyme
Location: 33124 - 34134 (+)
Type: CAZyme
Location: 33124 - 34134 (+)
Gene ID: HRGMv2_2310_14_32
Type: TC
Location: 34254 - 35675 (+)
Type: TC
Location: 34254 - 35675 (+)
Gene ID: HRGMv2_2310_14_33
Type: pfam
Location: 35691 - 37736 (+)
Type: pfam
Location: 35691 - 37736 (+)
Gene ID: HRGMv2_2310_14_34
Type:
Location: 37891 - 38058 (+)
Type:
Location: 37891 - 38058 (+)
Gene ID: HRGMv2_2310_14_35
Type: TC
Location: 38037 - 39398 (+)
Type: TC
Location: 38037 - 39398 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Alitiscatomonas
Species
Alitiscatomonas sp900541255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.