Cluster: HRGMv2_2310_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2310
- CGC Family ID: CGCFAM_02282
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2310_106 | HRGMv2_2310_106_1 | 207 | 1838 | - | 8.A.7.1.1 |
| TC | HRGMv2_2310_106 | HRGMv2_2310_106_2 | 1868 | 2125 | - | 8.A.8.1.1 |
| CAZyme | HRGMv2_2310_106 | HRGMv2_2310_106_3 | 2213 | 3877 | - | GH13_29 |
| TC | HRGMv2_2310_106 | HRGMv2_2310_106_4 | 3887 | 5866 | - | 4.A.1.2.13 |
| TF | HRGMv2_2310_106 | HRGMv2_2310_106_5 | 6126 | 6860 | + | GntR |
| TC | HRGMv2_2310_106 | HRGMv2_2310_106_6 | 7081 | 7566 | - | 3.A.9.1.2 |
Gene ID: HRGMv2_2310_106_1
Type: TC
Location: 207 - 1838 (-)
Type: TC
Location: 207 - 1838 (-)
Gene ID: HRGMv2_2310_106_2
Type: TC
Location: 1868 - 2125 (-)
Type: TC
Location: 1868 - 2125 (-)
Gene ID: HRGMv2_2310_106_3
Type: CAZyme
Location: 2213 - 3877 (-)
Type: CAZyme
Location: 2213 - 3877 (-)
Gene ID: HRGMv2_2310_106_4
Type: TC
Location: 3887 - 5866 (-)
Type: TC
Location: 3887 - 5866 (-)
Gene ID: HRGMv2_2310_106_5
Type: TF
Location: 6126 - 6860 (+)
Type: TF
Location: 6126 - 6860 (+)
Gene ID: HRGMv2_2310_106_6
Type: TC
Location: 7081 - 7566 (-)
Type: TC
Location: 7081 - 7566 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Alitiscatomonas
Species
Alitiscatomonas sp900541255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.