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Cluster: HRGMv2_2310_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2310_57 HRGMv2_2310_57_7 4095 5798 + 3.A.1.5.43
TC HRGMv2_2310_57 HRGMv2_2310_57_8 5814 6881 + 3.A.1.5.19
TC HRGMv2_2310_57 HRGMv2_2310_57_9 6904 7707 + 3.A.1.5.20
TC HRGMv2_2310_57 HRGMv2_2310_57_10 7710 8336 + 3.A.1.5.6
TC HRGMv2_2310_57 HRGMv2_2310_57_11 8349 9107 + 3.A.1.5.20
pfam HRGMv2_2310_57 HRGMv2_2310_57_12 9104 10348 + Aldedh | Aldedh
pfam HRGMv2_2310_57 HRGMv2_2310_57_13 10413 11105 + Lyx_isomer
TC HRGMv2_2310_57 HRGMv2_2310_57_14 11162 11977 - 3.A.1.1.34
TC HRGMv2_2310_57 HRGMv2_2310_57_15 11980 12843 - 3.A.1.1.4
TC HRGMv2_2310_57 HRGMv2_2310_57_16 12880 14187 - 3.A.1.1.4
CAZyme HRGMv2_2310_57 HRGMv2_2310_57_17 14530 17538 + GH2
TF HRGMv2_2310_57 HRGMv2_2310_57_18 17551 18603 + LacI
TC HRGMv2_2310_57 HRGMv2_2310_57_19 18619 19728 + 3.A.1.1.26
Gene ID: HRGMv2_2310_57_7
Type: TC
Location: 4095 - 5798 (+)
Gene ID: HRGMv2_2310_57_8
Type: TC
Location: 5814 - 6881 (+)
Gene ID: HRGMv2_2310_57_9
Type: TC
Location: 6904 - 7707 (+)
Gene ID: HRGMv2_2310_57_10
Type: TC
Location: 7710 - 8336 (+)
Gene ID: HRGMv2_2310_57_11
Type: TC
Location: 8349 - 9107 (+)
Gene ID: HRGMv2_2310_57_12
Type: pfam
Location: 9104 - 10348 (+)
Gene ID: HRGMv2_2310_57_13
Type: pfam
Location: 10413 - 11105 (+)
Gene ID: HRGMv2_2310_57_14
Type: TC
Location: 11162 - 11977 (-)
Gene ID: HRGMv2_2310_57_15
Type: TC
Location: 11980 - 12843 (-)
Gene ID: HRGMv2_2310_57_16
Type: TC
Location: 12880 - 14187 (-)
Gene ID: HRGMv2_2310_57_17
Type: CAZyme
Location: 14530 - 17538 (+)
Gene ID: HRGMv2_2310_57_18
Type: TF
Location: 17551 - 18603 (+)
Gene ID: HRGMv2_2310_57_19
Type: TC
Location: 18619 - 19728 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2310_57_13 vegetarian > vegan 2.35240 0.00694

🧭 Explore Read Mapping of CGC

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