Cluster: HRGMv2_2310_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2310
- CGC Family ID: CGCFAM_00033
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2310_47 | HRGMv2_2310_47_20 | 17867 | 18883 | - | GT2 |
| CAZyme | HRGMv2_2310_47 | HRGMv2_2310_47_21 | 18917 | 20317 | - | GH180 |
| pfam | HRGMv2_2310_47 | HRGMv2_2310_47_22 | 20380 | 21339 | - | Glycos_transf_2 |
| pfam | HRGMv2_2310_47 | HRGMv2_2310_47_23 | 21390 | 22502 | - | DegT_DnrJ_EryC1 |
| TC | HRGMv2_2310_47 | HRGMv2_2310_47_24 | 22502 | 23956 | - | 2.A.66.2.23 |
| CAZyme | HRGMv2_2310_47 | HRGMv2_2310_47_25 | 23953 | 25056 | - | GT4 |
Gene ID: HRGMv2_2310_47_20
Type: CAZyme
Location: 17867 - 18883 (-)
Type: CAZyme
Location: 17867 - 18883 (-)
Gene ID: HRGMv2_2310_47_21
Type: CAZyme
Location: 18917 - 20317 (-)
Type: CAZyme
Location: 18917 - 20317 (-)
Gene ID: HRGMv2_2310_47_22
Type: pfam
Location: 20380 - 21339 (-)
Type: pfam
Location: 20380 - 21339 (-)
Gene ID: HRGMv2_2310_47_23
Type: pfam
Location: 21390 - 22502 (-)
Type: pfam
Location: 21390 - 22502 (-)
Gene ID: HRGMv2_2310_47_24
Type: TC
Location: 22502 - 23956 (-)
Type: TC
Location: 22502 - 23956 (-)
Gene ID: HRGMv2_2310_47_25
Type: CAZyme
Location: 23953 - 25056 (-)
Type: CAZyme
Location: 23953 - 25056 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Alitiscatomonas
Species
Alitiscatomonas sp900541255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.