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Cluster: HRGMv2_2305_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2305_21 HRGMv2_2305_21_3 3584 4498 - GT2
pfam HRGMv2_2305_21 HRGMv2_2305_21_4 4582 5823 - LytR_cpsA_psr
TC HRGMv2_2305_21 HRGMv2_2305_21_5 5882 7279 - 9.B.18.1.1
CAZyme HRGMv2_2305_21 HRGMv2_2305_21_6 7364 8320 - GT2
CAZyme HRGMv2_2305_21 HRGMv2_2305_21_7 8336 10162 - GT2 | GT2
peptidase HRGMv2_2305_21 HRGMv2_2305_21_8 10263 11525 + S11.UPW
CAZyme HRGMv2_2305_21 HRGMv2_2305_21_9 11611 14010 - GT2 | GT2
CAZyme HRGMv2_2305_21 HRGMv2_2305_21_10 14033 16516 - GT2 | GT2
NULL(UNKNOWN) HRGMv2_2305_21 HRGMv2_2305_21_11 16540 17151 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2305_21 HRGMv2_2305_21_12 17162 17896 - 3.A.1.103.1
TC HRGMv2_2305_21 HRGMv2_2305_21_13 17910 18686 - 3.A.1.103.6
Gene ID: HRGMv2_2305_21_3
Type: CAZyme
Location: 3584 - 4498 (-)
Gene ID: HRGMv2_2305_21_4
Type: pfam
Location: 4582 - 5823 (-)
Gene ID: HRGMv2_2305_21_5
Type: TC
Location: 5882 - 7279 (-)
Gene ID: HRGMv2_2305_21_6
Type: CAZyme
Location: 7364 - 8320 (-)
Gene ID: HRGMv2_2305_21_7
Type: CAZyme
Location: 8336 - 10162 (-)
Gene ID: HRGMv2_2305_21_8
Type: peptidase
Location: 10263 - 11525 (+)
Gene ID: HRGMv2_2305_21_9
Type: CAZyme
Location: 11611 - 14010 (-)
Gene ID: HRGMv2_2305_21_10
Type: CAZyme
Location: 14033 - 16516 (-)
Gene ID: HRGMv2_2305_21_11
Type:
Location: 16540 - 17151 (-)
Gene ID: HRGMv2_2305_21_12
Type: TC
Location: 17162 - 17896 (-)
Gene ID: HRGMv2_2305_21_13
Type: TC
Location: 17910 - 18686 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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