Cluster: HRGMv2_2300_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2300
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2300_4 | HRGMv2_2300_4_77 | 79514 | 80494 | + | GH25 |
| pfam | HRGMv2_2300_4 | HRGMv2_2300_4_78 | 80501 | 81031 | - | Gate |
| TC | HRGMv2_2300_4 | HRGMv2_2300_4_79 | 81158 | 81730 | - | 9.B.156.3.1 |
| STP | HRGMv2_2300_4 | HRGMv2_2300_4_80 | 82289 | 83284 | - | NUDIX |
| pfam | HRGMv2_2300_4 | HRGMv2_2300_4_81 | 83354 | 84304 | - | cobW | DUF1980_C |
| TC | HRGMv2_2300_4 | HRGMv2_2300_4_82 | 84437 | 85579 | - | 9.B.10.1.1 |
Gene ID: HRGMv2_2300_4_77
Type: CAZyme
Location: 79514 - 80494 (+)
Type: CAZyme
Location: 79514 - 80494 (+)
Gene ID: HRGMv2_2300_4_78
Type: pfam
Location: 80501 - 81031 (-)
Type: pfam
Location: 80501 - 81031 (-)
Gene ID: HRGMv2_2300_4_79
Type: TC
Location: 81158 - 81730 (-)
Type: TC
Location: 81158 - 81730 (-)
Gene ID: HRGMv2_2300_4_80
Type: STP
Location: 82289 - 83284 (-)
Type: STP
Location: 82289 - 83284 (-)
Gene ID: HRGMv2_2300_4_81
Type: pfam
Location: 83354 - 84304 (-)
Type: pfam
Location: 83354 - 84304 (-)
Gene ID: HRGMv2_2300_4_82
Type: TC
Location: 84437 - 85579 (-)
Type: TC
Location: 84437 - 85579 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900551945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.