Cluster: HRGMv2_2300_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2300
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2300_26 | HRGMv2_2300_26_6 | 5139 | 7181 | + | GH13_20 |
| TF | HRGMv2_2300_26 | HRGMv2_2300_26_7 | 7610 | 8113 | + | MarR |
| TC | HRGMv2_2300_26 | HRGMv2_2300_26_8 | 8097 | 10409 | + | 3.A.1.135.6 |
| TC | HRGMv2_2300_26 | HRGMv2_2300_26_9 | 10412 | 12265 | + | 3.A.1.135.6 |
| TF | HRGMv2_2300_26 | HRGMv2_2300_26_10 | 12601 | 13347 | + | HTH_DeoR |
| STP | HRGMv2_2300_26 | HRGMv2_2300_26_11 | 13571 | 14485 | + | PfkB |
| TC | HRGMv2_2300_26 | HRGMv2_2300_26_12 | 14523 | 16490 | + | 4.A.2.1.20 |
Gene ID: HRGMv2_2300_26_6
Type: CAZyme
Location: 5139 - 7181 (+)
Type: CAZyme
Location: 5139 - 7181 (+)
Gene ID: HRGMv2_2300_26_7
Type: TF
Location: 7610 - 8113 (+)
Type: TF
Location: 7610 - 8113 (+)
Gene ID: HRGMv2_2300_26_8
Type: TC
Location: 8097 - 10409 (+)
Type: TC
Location: 8097 - 10409 (+)
Gene ID: HRGMv2_2300_26_9
Type: TC
Location: 10412 - 12265 (+)
Type: TC
Location: 10412 - 12265 (+)
Gene ID: HRGMv2_2300_26_10
Type: TF
Location: 12601 - 13347 (+)
Type: TF
Location: 12601 - 13347 (+)
Gene ID: HRGMv2_2300_26_11
Type: STP
Location: 13571 - 14485 (+)
Type: STP
Location: 13571 - 14485 (+)
Gene ID: HRGMv2_2300_26_12
Type: TC
Location: 14523 - 16490 (+)
Type: TC
Location: 14523 - 16490 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900551945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.