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Cluster: HRGMv2_2300_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2300_1 HRGMv2_2300_1_92 134812 135888 + 2.A.56.1.6
TC HRGMv2_2300_1 HRGMv2_2300_1_93 135891 137348 + 8.A.59.2.1
TF HRGMv2_2300_1 HRGMv2_2300_1_94 137711 138526 + HTH_AraC | HTH_AraC
TC HRGMv2_2300_1 HRGMv2_2300_1_95 139258 140286 + 2.A.56.1.5
pfam HRGMv2_2300_1 HRGMv2_2300_1_96 140287 140772 + DctQ
TC HRGMv2_2300_1 HRGMv2_2300_1_97 140769 142079 + 2.A.56.1.5
CAZyme HRGMv2_2300_1 HRGMv2_2300_1_98 142650 144902 + GH2
CAZyme HRGMv2_2300_1 HRGMv2_2300_1_99 145527 147758 + GH3
TC HRGMv2_2300_1 HRGMv2_2300_1_100 148207 150228 + 1.B.52.2.1
STP HRGMv2_2300_1 HRGMv2_2300_1_101 150586 154596 + Fer4
TC HRGMv2_2300_1 HRGMv2_2300_1_102 154547 156037 + 9.A.11.1.1
Gene ID: HRGMv2_2300_1_92
Type: TC
Location: 134812 - 135888 (+)
Gene ID: HRGMv2_2300_1_93
Type: TC
Location: 135891 - 137348 (+)
Gene ID: HRGMv2_2300_1_94
Type: TF
Location: 137711 - 138526 (+)
Gene ID: HRGMv2_2300_1_95
Type: TC
Location: 139258 - 140286 (+)
Gene ID: HRGMv2_2300_1_96
Type: pfam
Location: 140287 - 140772 (+)
Gene ID: HRGMv2_2300_1_97
Type: TC
Location: 140769 - 142079 (+)
Gene ID: HRGMv2_2300_1_98
Type: CAZyme
Location: 142650 - 144902 (+)
Gene ID: HRGMv2_2300_1_99
Type: CAZyme
Location: 145527 - 147758 (+)
Gene ID: HRGMv2_2300_1_100
Type: TC
Location: 148207 - 150228 (+)
Gene ID: HRGMv2_2300_1_101
Type: STP
Location: 150586 - 154596 (+)
Gene ID: HRGMv2_2300_1_102
Type: TC
Location: 154547 - 156037 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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