Cluster: HRGMv2_2300_CGC17
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2300
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2300_13 | HRGMv2_2300_13_34 | 38913 | 40706 | - | 3.A.1.106.2 |
| CAZyme | HRGMv2_2300_13 | HRGMv2_2300_13_35 | 40990 | 42549 | - | GH28 |
| NULL(UNKNOWN) | HRGMv2_2300_13 | HRGMv2_2300_13_36 | 42540 | 43616 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2300_13 | HRGMv2_2300_13_37 | 43789 | 45738 | - | CBM91 | GH43_12 |
| TC | HRGMv2_2300_13 | HRGMv2_2300_13_38 | 45970 | 46836 | - | 3.A.1.1.29 |
| TC | HRGMv2_2300_13 | HRGMv2_2300_13_39 | 46852 | 48309 | - | 3.A.1.1.29 |
| STP | HRGMv2_2300_13 | HRGMv2_2300_13_40 | 48535 | 50112 | - | SBP_bac_1 |
| pfam | HRGMv2_2300_13 | HRGMv2_2300_13_41 | 50500 | 51141 | - | UPF0029 | DUF1949 |
| CAZyme | HRGMv2_2300_13 | HRGMv2_2300_13_42 | 51331 | 54282 | + | GT51 |
| pfam | HRGMv2_2300_13 | HRGMv2_2300_13_43 | 54393 | 54752 | - | SpoVAC_SpoVAEB |
| TC | HRGMv2_2300_13 | HRGMv2_2300_13_44 | 54790 | 55803 | - | 9.A.11.1.1 |
| TC | HRGMv2_2300_13 | HRGMv2_2300_13_45 | 55916 | 56383 | - | 9.A.11.1.1 |
Gene ID: HRGMv2_2300_13_34
Type: TC
Location: 38913 - 40706 (-)
Type: TC
Location: 38913 - 40706 (-)
Gene ID: HRGMv2_2300_13_35
Type: CAZyme
Location: 40990 - 42549 (-)
Type: CAZyme
Location: 40990 - 42549 (-)
Gene ID: HRGMv2_2300_13_36
Type:
Location: 42540 - 43616 (-)
Type:
Location: 42540 - 43616 (-)
Gene ID: HRGMv2_2300_13_37
Type: CAZyme
Location: 43789 - 45738 (-)
Type: CAZyme
Location: 43789 - 45738 (-)
Gene ID: HRGMv2_2300_13_38
Type: TC
Location: 45970 - 46836 (-)
Type: TC
Location: 45970 - 46836 (-)
Gene ID: HRGMv2_2300_13_39
Type: TC
Location: 46852 - 48309 (-)
Type: TC
Location: 46852 - 48309 (-)
Gene ID: HRGMv2_2300_13_40
Type: STP
Location: 48535 - 50112 (-)
Type: STP
Location: 48535 - 50112 (-)
Gene ID: HRGMv2_2300_13_41
Type: pfam
Location: 50500 - 51141 (-)
Type: pfam
Location: 50500 - 51141 (-)
Gene ID: HRGMv2_2300_13_42
Type: CAZyme
Location: 51331 - 54282 (+)
Type: CAZyme
Location: 51331 - 54282 (+)
Gene ID: HRGMv2_2300_13_43
Type: pfam
Location: 54393 - 54752 (-)
Type: pfam
Location: 54393 - 54752 (-)
Gene ID: HRGMv2_2300_13_44
Type: TC
Location: 54790 - 55803 (-)
Type: TC
Location: 54790 - 55803 (-)
Gene ID: HRGMv2_2300_13_45
Type: TC
Location: 55916 - 56383 (-)
Type: TC
Location: 55916 - 56383 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900551945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.