Cluster: HRGMv2_2300_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2300
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2300_10 | HRGMv2_2300_10_12 | 13116 | 14039 | - | 2.A.69.4.3 |
| NULL(UNKNOWN) | HRGMv2_2300_10 | HRGMv2_2300_10_13 | 14365 | 15372 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2300_10 | HRGMv2_2300_10_14 | 15539 | 16984 | - | 2.A.114.1.4 |
| CAZyme | HRGMv2_2300_10 | HRGMv2_2300_10_15 | 17395 | 18462 | + | GT2 |
Gene ID: HRGMv2_2300_10_12
Type: TC
Location: 13116 - 14039 (-)
Type: TC
Location: 13116 - 14039 (-)
Gene ID: HRGMv2_2300_10_13
Type:
Location: 14365 - 15372 (-)
Type:
Location: 14365 - 15372 (-)
Gene ID: HRGMv2_2300_10_14
Type: TC
Location: 15539 - 16984 (-)
Type: TC
Location: 15539 - 16984 (-)
Gene ID: HRGMv2_2300_10_15
Type: CAZyme
Location: 17395 - 18462 (+)
Type: CAZyme
Location: 17395 - 18462 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900551945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2300_10_14 | vegetarian > vegan | 1.07143 | 0.01057 |