Cluster: HRGMv2_2300_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2300
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2300_9 | HRGMv2_2300_9_53 | 65270 | 66289 | - | 2.A.28.2.4 |
| CAZyme | HRGMv2_2300_9 | HRGMv2_2300_9_54 | 66985 | 68025 | + | CE4 |
| pfam | HRGMv2_2300_9 | HRGMv2_2300_9_55 | 68405 | 70915 | - | Transglut_core | Big_2 | LRR_5 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 |
| TC | HRGMv2_2300_9 | HRGMv2_2300_9_56 | 71186 | 73261 | - | 3.A.3.32.3 |
Gene ID: HRGMv2_2300_9_53
Type: TC
Location: 65270 - 66289 (-)
Type: TC
Location: 65270 - 66289 (-)
Gene ID: HRGMv2_2300_9_54
Type: CAZyme
Location: 66985 - 68025 (+)
Type: CAZyme
Location: 66985 - 68025 (+)
Gene ID: HRGMv2_2300_9_55
Type: pfam
Location: 68405 - 70915 (-)
Type: pfam
Location: 68405 - 70915 (-)
Gene ID: HRGMv2_2300_9_56
Type: TC
Location: 71186 - 73261 (-)
Type: TC
Location: 71186 - 73261 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900551945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.