Cluster: HRGMv2_2299_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2299
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2299_4 | HRGMv2_2299_4_117 | 122185 | 123117 | + | 3.A.5.1.1 |
| STP | HRGMv2_2299_4 | HRGMv2_2299_4_118 | 123133 | 124344 | + | ACT | PALP |
| STP | HRGMv2_2299_4 | HRGMv2_2299_4_119 | 124367 | 125644 | + | GGDEF |
| TC | HRGMv2_2299_4 | HRGMv2_2299_4_120 | 125678 | 126892 | + | 8.A.59.4.1 |
| CAZyme | HRGMv2_2299_4 | HRGMv2_2299_4_121 | 126936 | 128360 | - | GH13 |
| STP | HRGMv2_2299_4 | HRGMv2_2299_4_122 | 128518 | 128862 | + | Sigma70_r4 |
| TC | HRGMv2_2299_4 | HRGMv2_2299_4_123 | 128890 | 130233 | + | 3.A.5.2.2 |
Gene ID: HRGMv2_2299_4_117
Type: TC
Location: 122185 - 123117 (+)
Type: TC
Location: 122185 - 123117 (+)
Gene ID: HRGMv2_2299_4_118
Type: STP
Location: 123133 - 124344 (+)
Type: STP
Location: 123133 - 124344 (+)
Gene ID: HRGMv2_2299_4_119
Type: STP
Location: 124367 - 125644 (+)
Type: STP
Location: 124367 - 125644 (+)
Gene ID: HRGMv2_2299_4_120
Type: TC
Location: 125678 - 126892 (+)
Type: TC
Location: 125678 - 126892 (+)
Gene ID: HRGMv2_2299_4_121
Type: CAZyme
Location: 126936 - 128360 (-)
Type: CAZyme
Location: 126936 - 128360 (-)
Gene ID: HRGMv2_2299_4_122
Type: STP
Location: 128518 - 128862 (+)
Type: STP
Location: 128518 - 128862 (+)
Gene ID: HRGMv2_2299_4_123
Type: TC
Location: 128890 - 130233 (+)
Type: TC
Location: 128890 - 130233 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA2821
Species
UBA2821 sp902763335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.