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Cluster: HRGMv2_2299_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2299_5 HRGMv2_2299_5_135 143666 146170 + GT51
pfam HRGMv2_2299_5 HRGMv2_2299_5_136 146224 146580 - SpoVAC_SpoVAEB
pfam HRGMv2_2299_5 HRGMv2_2299_5_137 146598 147608 - SpoVAD
CAZyme HRGMv2_2299_5 HRGMv2_2299_5_138 147752 149356 + GH13_20
STP HRGMv2_2299_5 HRGMv2_2299_5_139 149429 150688 - EAL | GGDEF
pfam HRGMv2_2299_5 HRGMv2_2299_5_140 150819 152558 - Phage_lysozyme2
TC HRGMv2_2299_5 HRGMv2_2299_5_141 152647 153102 - 9.A.11.1.1
TC HRGMv2_2299_5 HRGMv2_2299_5_142 153141 153557 - 9.A.11.1.1
TC HRGMv2_2299_5 HRGMv2_2299_5_143 153554 154159 - 9.A.11.1.1
NULL(UNKNOWN) HRGMv2_2299_5 HRGMv2_2299_5_144 154152 154322 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2299_5 HRGMv2_2299_5_145 154426 156945 - 1.B.52.2.1
Gene ID: HRGMv2_2299_5_135
Type: CAZyme
Location: 143666 - 146170 (+)
Gene ID: HRGMv2_2299_5_136
Type: pfam
Location: 146224 - 146580 (-)
Gene ID: HRGMv2_2299_5_137
Type: pfam
Location: 146598 - 147608 (-)
Gene ID: HRGMv2_2299_5_138
Type: CAZyme
Location: 147752 - 149356 (+)
Gene ID: HRGMv2_2299_5_139
Type: STP
Location: 149429 - 150688 (-)
Gene ID: HRGMv2_2299_5_140
Type: pfam
Location: 150819 - 152558 (-)
Gene ID: HRGMv2_2299_5_141
Type: TC
Location: 152647 - 153102 (-)
Gene ID: HRGMv2_2299_5_142
Type: TC
Location: 153141 - 153557 (-)
Gene ID: HRGMv2_2299_5_143
Type: TC
Location: 153554 - 154159 (-)
Gene ID: HRGMv2_2299_5_144
Type:
Location: 154152 - 154322 (-)
Gene ID: HRGMv2_2299_5_145
Type: TC
Location: 154426 - 156945 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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