Cluster: HRGMv2_2293_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2293
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2293_72 | HRGMv2_2293_72_1 | 2 | 148 | + | 2.A.8.1.7 |
| pfam | HRGMv2_2293_72 | HRGMv2_2293_72_2 | 218 | 2017 | + | ILVD_EDD_N | ILV_EDD_C |
| CAZyme | HRGMv2_2293_72 | HRGMv2_2293_72_3 | 2150 | 3187 | + | GH179 |
| pfam | HRGMv2_2293_72 | HRGMv2_2293_72_4 | 3340 | 4263 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_2293_72 | HRGMv2_2293_72_5 | 4544 | 7039 | + | GH3 |
Gene ID: HRGMv2_2293_72_1
Type: TC
Location: 2 - 148 (+)
Type: TC
Location: 2 - 148 (+)
Gene ID: HRGMv2_2293_72_2
Type: pfam
Location: 218 - 2017 (+)
Type: pfam
Location: 218 - 2017 (+)
Gene ID: HRGMv2_2293_72_3
Type: CAZyme
Location: 2150 - 3187 (+)
Type: CAZyme
Location: 2150 - 3187 (+)
Gene ID: HRGMv2_2293_72_4
Type: pfam
Location: 3340 - 4263 (+)
Type: pfam
Location: 3340 - 4263 (+)
Gene ID: HRGMv2_2293_72_5
Type: CAZyme
Location: 4544 - 7039 (+)
Type: CAZyme
Location: 4544 - 7039 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp934418055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2293_72_1 | vegan > omnivore | 2.89664 | 0.02494 |
| HRGMv2_2293_72_4 | vegetarian > omnivore | 1.39539 | 0.03323 |
| HRGMv2_2293_72_4 | vegetarian > vegan | 1.91625 | 0.02177 |