Cluster: HRGMv2_2293_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2293
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2293_70 | HRGMv2_2293_70_1 | 80 | 1423 | + | GH28 |
| TC | HRGMv2_2293_70 | HRGMv2_2293_70_2 | 1638 | 2237 | - | 3.A.1.25.5 |
| pfam | HRGMv2_2293_70 | HRGMv2_2293_70_3 | 2464 | 4410 | + | Bmp |
| pfam | HRGMv2_2293_70 | HRGMv2_2293_70_4 | 4414 | 5037 | + | Metallophos | Metallophos_2 |
| TC | HRGMv2_2293_70 | HRGMv2_2293_70_5 | 5034 | 5510 | + | 1.A.22.1.4 |
Gene ID: HRGMv2_2293_70_1
Type: CAZyme
Location: 80 - 1423 (+)
Type: CAZyme
Location: 80 - 1423 (+)
Gene ID: HRGMv2_2293_70_2
Type: TC
Location: 1638 - 2237 (-)
Type: TC
Location: 1638 - 2237 (-)
Gene ID: HRGMv2_2293_70_3
Type: pfam
Location: 2464 - 4410 (+)
Type: pfam
Location: 2464 - 4410 (+)
Gene ID: HRGMv2_2293_70_4
Type: pfam
Location: 4414 - 5037 (+)
Type: pfam
Location: 4414 - 5037 (+)
Gene ID: HRGMv2_2293_70_5
Type: TC
Location: 5034 - 5510 (+)
Type: TC
Location: 5034 - 5510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
UBA3402
Species
UBA3402 sp934418055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2293_70_2 | vegan > omnivore | 1.05324 | 0.04426 |