Cluster: HRGMv2_2290_CGC20
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_10018
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2290_17 | HRGMv2_2290_17_1 | 1 | 1080 | + | 3.A.1.1.29 |
| TC | HRGMv2_2290_17 | HRGMv2_2290_17_2 | 1096 | 2022 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | HRGMv2_2290_17 | HRGMv2_2290_17_3 | 2293 | 4029 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | HRGMv2_2290_17 | HRGMv2_2290_17_4 | 4228 | 5574 | + | S1_65 |
| CAZyme | HRGMv2_2290_17 | HRGMv2_2290_17_5 | 5605 | 7407 | + | CE12 |
| CAZyme | HRGMv2_2290_17 | HRGMv2_2290_17_6 | 7606 | 9771 | + | GH112 |
| TC | HRGMv2_2290_17 | HRGMv2_2290_17_7 | 9968 | 10453 | + | 2.A.115.2.14 |
| TF | HRGMv2_2290_17 | HRGMv2_2290_17_8 | 10615 | 11529 | - | HTH_5 |
| CAZyme | HRGMv2_2290_17 | HRGMv2_2290_17_9 | 11888 | 12871 | + | GH43_26 |
| NULL(UNKNOWN) | HRGMv2_2290_17 | HRGMv2_2290_17_10 | 13064 | 14884 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2290_17 | HRGMv2_2290_17_11 | 15035 | 16009 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2290_17 | HRGMv2_2290_17_12 | 16526 | 17578 | + | GH105 |
| peptidase | HRGMv2_2290_17 | HRGMv2_2290_17_13 | 17669 | 19333 | + | M03.010 |
| TC | HRGMv2_2290_17 | HRGMv2_2290_17_14 | 19333 | 21072 | + | 3.A.1.106.2 |
Gene ID: HRGMv2_2290_17_1
Type: TC
Location: 1 - 1080 (+)
Type: TC
Location: 1 - 1080 (+)
Gene ID: HRGMv2_2290_17_2
Type: TC
Location: 1096 - 2022 (+)
Type: TC
Location: 1096 - 2022 (+)
Gene ID: HRGMv2_2290_17_3
Type:
Location: 2293 - 4029 (+)
Type:
Location: 2293 - 4029 (+)
Gene ID: HRGMv2_2290_17_4
Type: sulfatase
Location: 4228 - 5574 (+)
Type: sulfatase
Location: 4228 - 5574 (+)
Gene ID: HRGMv2_2290_17_5
Type: CAZyme
Location: 5605 - 7407 (+)
Type: CAZyme
Location: 5605 - 7407 (+)
Gene ID: HRGMv2_2290_17_6
Type: CAZyme
Location: 7606 - 9771 (+)
Type: CAZyme
Location: 7606 - 9771 (+)
Gene ID: HRGMv2_2290_17_7
Type: TC
Location: 9968 - 10453 (+)
Type: TC
Location: 9968 - 10453 (+)
Gene ID: HRGMv2_2290_17_8
Type: TF
Location: 10615 - 11529 (-)
Type: TF
Location: 10615 - 11529 (-)
Gene ID: HRGMv2_2290_17_9
Type: CAZyme
Location: 11888 - 12871 (+)
Type: CAZyme
Location: 11888 - 12871 (+)
Gene ID: HRGMv2_2290_17_10
Type:
Location: 13064 - 14884 (+)
Type:
Location: 13064 - 14884 (+)
Gene ID: HRGMv2_2290_17_11
Type: TF
Location: 15035 - 16009 (-)
Type: TF
Location: 15035 - 16009 (-)
Gene ID: HRGMv2_2290_17_12
Type: CAZyme
Location: 16526 - 17578 (+)
Type: CAZyme
Location: 16526 - 17578 (+)
Gene ID: HRGMv2_2290_17_13
Type: peptidase
Location: 17669 - 19333 (+)
Type: peptidase
Location: 17669 - 19333 (+)
Gene ID: HRGMv2_2290_17_14
Type: TC
Location: 19333 - 21072 (+)
Type: TC
Location: 19333 - 21072 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.