Cluster: HRGMv2_2284_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2284
- CGC Family ID: CGCFAM_02430
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2284_3 | HRGMv2_2284_3_146 | 144186 | 145895 | + | GH18 |
| NULL(UNKNOWN) | HRGMv2_2284_3 | HRGMv2_2284_3_147 | 146077 | 146241 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2284_3 | HRGMv2_2284_3_148 | 146542 | 147795 | - | 3.A.1.122.2 |
| NULL(UNKNOWN) | HRGMv2_2284_3 | HRGMv2_2284_3_149 | 147810 | 149387 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2284_3 | HRGMv2_2284_3_150 | 149359 | 150066 | - | 3.A.1.122.2 |
| pfam | HRGMv2_2284_3 | HRGMv2_2284_3_151 | 150063 | 151271 | - | Biotin_lipoyl_2 |
| pfam | HRGMv2_2284_3 | HRGMv2_2284_3_152 | 151824 | 154979 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915 |
| CAZyme | HRGMv2_2284_3 | HRGMv2_2284_3_153 | 155007 | 157502 | + | GT35 |
| STP | HRGMv2_2284_3 | HRGMv2_2284_3_154 | 157582 | 158490 | - | HATPase_c | HisKA |
| pfam | HRGMv2_2284_3 | HRGMv2_2284_3_155 | 158506 | 159330 | - | ABC2_membrane_2 | ABC2_membrane_3 |
| TC | HRGMv2_2284_3 | HRGMv2_2284_3_156 | 159323 | 160237 | - | 3.A.1.131.1 |
Gene ID: HRGMv2_2284_3_146
Type: CAZyme
Location: 144186 - 145895 (+)
Type: CAZyme
Location: 144186 - 145895 (+)
Gene ID: HRGMv2_2284_3_147
Type:
Location: 146077 - 146241 (-)
Type:
Location: 146077 - 146241 (-)
Gene ID: HRGMv2_2284_3_148
Type: TC
Location: 146542 - 147795 (-)
Type: TC
Location: 146542 - 147795 (-)
Gene ID: HRGMv2_2284_3_149
Type:
Location: 147810 - 149387 (-)
Type:
Location: 147810 - 149387 (-)
Gene ID: HRGMv2_2284_3_150
Type: TC
Location: 149359 - 150066 (-)
Type: TC
Location: 149359 - 150066 (-)
Gene ID: HRGMv2_2284_3_151
Type: pfam
Location: 150063 - 151271 (-)
Type: pfam
Location: 150063 - 151271 (-)
Gene ID: HRGMv2_2284_3_152
Type: pfam
Location: 151824 - 154979 (+)
Type: pfam
Location: 151824 - 154979 (+)
Gene ID: HRGMv2_2284_3_153
Type: CAZyme
Location: 155007 - 157502 (+)
Type: CAZyme
Location: 155007 - 157502 (+)
Gene ID: HRGMv2_2284_3_154
Type: STP
Location: 157582 - 158490 (-)
Type: STP
Location: 157582 - 158490 (-)
Gene ID: HRGMv2_2284_3_155
Type: pfam
Location: 158506 - 159330 (-)
Type: pfam
Location: 158506 - 159330 (-)
Gene ID: HRGMv2_2284_3_156
Type: TC
Location: 159323 - 160237 (-)
Type: TC
Location: 159323 - 160237 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus caecimuris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.